Astyanax mexicanus (Mexican tetra): 103039614
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Entry
103039614 CDS
T05042
Symbol
sox5
Name
(RefSeq) transcription factor SOX-5 isoform X1
KO
K09269
transcription factor SOX5/6/13 (SOX group D)
Organism
amex
Astyanax mexicanus (Mexican tetra)
Brite
KEGG Orthology (KO) [BR:
amex00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
amex03000
]
103039614 (sox5)
Transcription factors [BR:
amex03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
103039614 (sox5)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HMG_box
HMG_box_2
HMG_WDHD1
Motif
Other DBs
NCBI-GeneID:
103039614
NCBI-ProteinID:
XP_022527476
Ensembl:
ENSAMXG00000007582
LinkDB
All DBs
Position
2:complement(2102151..2260214)
Genome browser
AA seq
771 aa
AA seq
DB search
MLTEPEIPQEFNRMSSKRPASPYGGTDGEVVMATSRQRLEDEEVDGHAVIHLPLSSYCSK
VSPRSPRTLDSPPTLHSSMEQESSKGLALSPYTQHNSSTSPSKQQQQQQQQQPDDGSGRP
GSEPGSATALGTPERRKGSLADVVDTLKQRKMEELIKSEPEEAPSIERLLSKDWKDKLLA
MGSGHFGEIKGTPDSLAEKERQLMGMISQLSSLREQLLAAHEEQKKLAASQIEKQRQQME
LAKQQQDQIARQQQQLLQQQHKINLLQQQIQQVQGQLPPLMIPVFPPDQRTLAAAAAQQG
FLLPPGFNYKPGCNDPYPLQLIPTSMAAAAAATPGLGPLQLQQLYAAQLAAMQVSPGAKH
GAVPQPNLAAGTHSPTSGHSEKSRTSPPPKPKDEGAQPLNLSAKPKTSESKSPTSPASPQ
VPAMKLGPGSLKHSAPSSIGGPAPRVSSIDLLSSITSGGYLNDHEAVTKAFQEARQMKEQ
LKREQQVLDAKVAAVNSLTLNNGRSEKEKAALESLSQQLKQSEENKFTHSMMDFGMSGDS
DGSPSVSDSRMFREARGRGSAEPHIKRPMNAFMVWAKDERRKILQAFPDMHNSNISKILG
SRWKAMTNLEKQPYYEEQARLSKQHLEKYPDYKYKPRPKRTCLVDGKKLRIGEYKAIMRS
RRQEMRQYFTVGQQAQLPLSSAGVVYPGALSMAGMPSPQMPSEHSSMSSSPEPAPPISGQ
PSYLNLSKGEEPRIKEEELRMDESNGDAYDDFDYEDEDGDFGSDSENHVTQ
NT seq
2316 nt
NT seq
+upstream
nt +downstream
nt
atgctcactgagcctgagatacctcaggagtttaacaggatgtcttccaagcgaccagcc
tctccatatgggggaacagatggagaggtagtcatggcgacgagcagacagcgactggag
gatgaggaggttgacggacacgctgtcattcacttgcccctgagctcctactgcagcaag
gtgtcccctcgctcgccccgcaccctcgacagcccgcccacactacacagcagcatggag
caggagagcagtaaaggcttggccctgagcccctacacccagcacaactcttctacctca
cccagtaagcagcagcagcagcagcagcagcagcagccggacgacggctccgggcggccg
ggcagcgagccgggctctgccaccgccctgggcactccggagaggcgtaagggcagcctg
gccgacgtggtggacacgctcaaacagcgcaagatggaggagctgatcaagagcgagcca
gaggaggcccccagcattgagaggctgctatccaaggactggaaggacaagctgctggcc
atgggctctggtcactttggagagatcaaaggtaccccggacagcctggcggagaaagag
cggcagctgatggggatgatcagccagctgagcagcctgagagagcagctcctggcggca
cacgaggagcagaagaagctggcggcctcgcagatagagaagcagaggcagcagatggag
ctcgccaagcagcagcaggaccagattgctcgccaacagcagcagctcctgcagcagcaa
cacaaaatcaacctcctgcagcagcaaatccagcaggtccagggtcagctgccaccactg
atgatccctgtctttccaccagatcagaggacgttggcggcagccgcagcccagcaggga
ttcctcttgcctccgggcttcaactacaaaccaggttgcaacgacccgtaccccctccag
ctgatccccaccagtatggcagctgctgcggccgccacgcccggcctgggtcctcttcag
ctccagcagctgtatgcagctcagttggcagcgatgcaggtgtctccgggggccaagcat
ggcgccgtgcctcaacccaacctggcagccggcacacactcgcccaccagtggccatagt
gagaagagcaggaccagtccaccacctaaacccaaggacgagggcgctcagcccctgaat
ctgtcagccaagcctaagacatccgagagcaagtcacccacctcccccgcttccccacag
gtccccgccatgaagctgggccccggatccctgaagcacagcgccccctccagcatcgga
ggaccagcacccagagtcagctccatagacctgttgtcgtccatcacctcgggaggctac
ctgaacgaccacgaggccgtgaccaaggcctttcaggaggcgcggcagatgaaggagcag
ctgaagagggagcagcaggttctggacgccaaagtggcagcagtcaacagcctcaccctc
aacaacggacgctctgaaaaggagaaggcagctctagagagcctgagtcagcagctgaaa
cagtctgaggagaataagttcactcactccatgatggacttcggcatgagcggcgactct
gatggaagtcccagtgtttcggactcgaggatgttccgtgaagctcggggtcgcggcagt
gccgaaccccacatcaaacgacccatgaacgccttcatggtgtgggcgaaggacgagagg
aggaagatcctgcaggctttccccgacatgcacaactccaacatcagcaaaatcctcggt
tcacgctggaaagccatgacgaatctggagaagcagccgtattacgaggagcaggcgcgt
ctcagtaagcagcacctggaaaaatatcccgactacaagtacaaaccgcggcccaaacgc
acctgcctggtggacggcaagaagcttcgcatcggcgaatacaaagccatcatgcgcagc
cgccggcaggagatgcgccagtactttactgtcggtcagcaggcccagctgcctctgtcc
tcagcgggcgtggtgtacccaggtgctctctccatggccgggatgccgtcgccccaaatg
ccctcagagcactccagcatgtccagcagccccgagccggctccaccaatcagcggccag
ccctcctacctcaacctgagcaagggggaggagccccgcattaaagaggaggagcttcgg
atggacgagagcaacggcgacgcctacgacgacttcgactacgaggacgaggacggagac
ttcggcagcgacagcgagaatcacgtgactcagtaa
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