Astyanax mexicanus (Mexican tetra): 103039703
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Entry
103039703 CDS
T05042
Symbol
xab2
Name
(RefSeq) pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
amex
Astyanax mexicanus (Mexican tetra)
Pathway
amex03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
amex00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
103039703 (xab2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
amex03019
]
103039703 (xab2)
03041 Spliceosome [BR:
amex03041
]
103039703 (xab2)
Messenger RNA biogenesis [BR:
amex03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
103039703 (xab2)
Spliceosome [BR:
amex03041
]
Complex B
Other components
Prp19-related factors
103039703 (xab2)
Complex C
103039703 (xab2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
TPR_2
TPR_12
TPR_8
TPR_15
ARM_TT21_C
TPR_16
ARM_TT21
NRDE-2
SNAP
PPR
TPR_1
DUF4515
LTN1_E3_ligase_6th
Motif
Other DBs
NCBI-GeneID:
103039703
NCBI-ProteinID:
XP_022523751
Ensembl:
ENSAMXG00000017600
UniProt:
W5LE57
LinkDB
All DBs
Position
3:complement(4819881..4833363)
Genome browser
AA seq
849 aa
AA seq
DB search
MPTFNGKPDVTFEEDDLPYEEEIIRNPYSVKCWMRYIEHKQSGSKSVLNMIYERALKELP
GSYKLWYNYLRERRKQVKGKCVTDPAYEEINNCHERALVFMHKMPRIWLDYCQFIVSQCK
ITRSRRTFDRALRALPITQHSRIWPLYLKFARNLPLPETAIRVYRRYLKLSPENTEEYID
YLRSVGRLDEAAVRLAAVVNDESFVSKEGKSNYQLWHELCDLISQNPDKVTSLNVGAIIR
GGLTRFTDQLGKLWCSMADYYIRSGHFEKARDVYEEAIQTVVTVRDFTQVFDSYAQFEES
MIAAKMETTSEIGHDEDDDIDLELRLARFEQLITRRPLLLNSVLLRQNPHNVHEWHKRVK
LYEGNPRQIINTYTEAVQTVDPVKSTGKPHSLWVAFARFYEDNEQLEDARTIFEKATKVN
YKVVDDLAAVWCEYGEMELRHENYDQALRILRKATAIPARKAEYFDSSEPVQNRVYKSLK
VWSMLADLEESLGTFQSTKAVYDRIIDLRIATPQIIINYAMFLDEHNYFEESFKAYERGI
ALFKWPNVYDIWNTYLTKFIDRYGGKKLERARDLFEQALDGCPSKFAKTIYLLYAKLEEE
YGLARHAMAVYERATQAVETEERLQMFNIYIKRAAEIYGVTHTRAIYQKAIEILSDEHAR
DMCLRFADMESKLGEIDRARAIYSFCSQMCDPRMTANFWQTWKEFEIRHGNEDTIREMLR
IKRSVQATYNTQVNFMSSQMLKATTSATGTISDLAPGQSGVDDMKMLEQKAQQLAAEAEQ
DKAKPKDKILFVRSDTSRSELAELAKQANPDEIDIDDDEDDEDGDAEPDEVQLEQKSVPT
AVFGGLKDD
NT seq
2550 nt
NT seq
+upstream
nt +downstream
nt
atgcctacttttaacggaaaaccggacgttacgtttgaagaagatgacttgccctatgaa
gaggaaatcatcaggaatccatattcagtcaagtgttggatgcgctacattgaacacaag
caaagtggctccaagtcagtgcttaatatgatctacgagcgagcgctgaaggagctacct
ggcagttacaaactgtggtacaactatttgagggagcggaggaagcaggtcaagggaaaa
tgcgtaacagatcccgcttatgaggaaatcaacaactgccatgagagagcactggtgttt
atgcacaagatgccgaggatatggctggattactgtcagttcattgtgtctcagtgcaaa
atcacaaggagccgtcgtaccttcgaccgagcgctcagagccctacccatcactcagcat
tcccgaatctggcctctgtacctcaagtttgcacgaaacttacctctgcctgagaccgcc
attcgcgtttatcgtagatacctcaagctctctccagagaacacagaggagtacattgat
tacctgcgctctgtaggacggctggatgaggcagcagtccggctggcagctgtggttaat
gatgaaagctttgtctcgaaagaagggaagtcaaactaccagctctggcacgagctgtgt
gacctcatctcccagaacccagacaaggtgacctcgctgaatgtgggcgccatcattcgt
ggcggcctcacccgcttcacggaccagttaggcaagctctggtgctccatggctgactac
tacatccgcagtggccactttgagaaggctcgtgatgtgtatgaggaggctatacaaaca
gtagtcactgtgagagactttacccaggtgtttgacagttatgctcagttcgaggagagt
atgatcgctgccaagatggagactacatcggagatcggacatgatgaggatgatgatatt
gacctggaattgcgtttggctcgtttcgagcagctgatcacccgccggccactcttatta
aacagcgtgttgctccggcaaaacccacacaatgttcacgagtggcacaagagagtcaag
ctctatgaaggcaatcctagacagataatcaacacctacactgaggctgtgcagacagtg
gatcccgtgaaatcaacggggaagccccactcgctttgggtcgcgttcgcaaggttctac
gaggataatgagcagctggaagatgccagaaccatatttgagaaggccaccaaagtgaac
tataaggtggtagatgacctggcggcagtgtggtgtgagtacggggagatggaactgcgg
catgagaactatgaccaggcactgcggatcctcaggaaagccacagcgatcccagcaagg
aaagcagagtactttgattcgtcagaaccagtgcagaatcgagtgtataaatctttgaaa
gtttggtcgatgttggctgatctggaagagagtctcggcacgttccagtcgacgaaggca
gtgtatgaccgcattatcgacctccgcattgcaactccacagatcattataaactatgcc
atgttcctggacgaacacaactactttgaggagagcttcaaggcatacgagcgtggcatt
gccctcttcaagtggcccaacgtgtatgacatctggaacacgtatctcaccaagttcatt
gatcgctacggaggcaagaagctggagagagcacgagacctgttcgagcaggctttggat
gggtgtccctccaagtttgccaaaaccatatacctgctgtatgccaagctggaggaagag
tacgggctggcacgacatgccatggctgtgtatgagagagccacacaggctgtggagaca
gaggaacgccttcaaatgttcaacatctacatcaaacgagctgcggaaatctatggagtc
acccacaccagagccatctaccagaaagccattgagattctttcagatgagcatgccagg
gacatgtgtctgcgctttgctgacatggagagcaaactgggtgagattgaccgagcgaga
gccatctattccttctgctcccagatgtgtgatcccaggatgactgcaaacttctggcag
acatggaaggagtttgagattcgccatggaaacgaggacaccatccgcgagatgctcagg
ataaagcgcagcgtccaggccacctacaacacacaggtcaacttcatgtcctcacagatg
ctcaaagcaaccacaagtgccacaggaacaatatcagacctggctcctggtcagagtggt
gttgacgacatgaagatgttggagcagaaggcccaacagttagctgcagaagctgagcag
gataaggccaaacccaaagacaagatactgtttgtcaggagtgacacctctcggagcgaa
ctggcagaactcgccaaacaggccaacccagacgagattgacattgatgatgatgaggac
gacgaagatggagatgcagaaccagatgaggtgcagctggagcagaagagcgtccccact
gctgtcttcggaggactaaaggatgactga
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