Astyanax mexicanus (Mexican tetra): 103039735
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Entry
103039735 CDS
T05042
Symbol
hmbox1b
Name
(RefSeq) homeobox-containing protein 1 isoform X2
KO
K24885
homeobox-containing protein 1
Organism
amex
Astyanax mexicanus (Mexican tetra)
Brite
KEGG Orthology (KO) [BR:
amex00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
amex03000
]
103039735 (hmbox1b)
Transcription factors [BR:
amex03000
]
Eukaryotic type
Helix-turn-helix
Homeo domain POU
103039735 (hmbox1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HNF-1_N
Homeodomain
Homeobox_KN
HTH_3
AbiJ_NTD3
DUF494
HTH_24
HTH_31
HTH_26
HTH_37
HTH_23
Motif
Other DBs
NCBI-GeneID:
103039735
NCBI-ProteinID:
XP_007255523
Ensembl:
ENSAMXG00000018539
LinkDB
All DBs
Position
1:84622854..84646729
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AA seq
535 aa
AA seq
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MMPRSQLDVNIAVVSQTKGGSVRDWEQKEAGQAGKYSLLIIHLHQSGTGALQTVVNGLAG
WDVCNTFRMSHYTDEPRFTIEQIDLLQRLRRTGMTKPEIVHALDTLERLDREHGDKFGRR
IPTASDSASNNNGSTSASAPASNNSASNAATATASTTSIATQTQYRSGLSPSPSNSYATS
PPQAVLPSPVSIIGIVPNGRDALATTPNGKLSPPRYPMSAAAAVRPYGFEGPDEEMDIDD
KVEDLIRRDSSMVKEEIKAFLANRRISQAVVAQVTGISQSRISHWLLQQGSDLSEQKKRA
FYRWYQLEKTTPGATLNMRPAPLALEEIEWRQTPPPISTAPGSFRLRRGSRFTWRKECLA
VMESYFNDNQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKRR
ANIGSFFQEATILESHGIDVQSPGGHSNSDDIDASDYTEQGCEMPYFEKRTMTRPFGFYR
LEPTSPTQDEGTNHADHQDPISLAVEMAAVNHSILALSRPGAVTSDIKTEALDDD
NT seq
1608 nt
NT seq
+upstream
nt +downstream
nt
atgatgccccgttcacagcttgatgtcaacattgccgttgtcagtcagacaaaaggcgga
tcagtcagagactgggagcagaaggaggccggacaggctggaaaatattcactcctaata
attcacctgcatcagtctggcactggagctttacagactgtggtaaatggtctggcgggc
tgggacgtttgcaatacatttaggatgtcccactacacagacgagcctcgcttcaccatc
gagcagatcgatctgctccagaggctgcggcggaccggcatgaccaagcccgagatcgtc
catgcgctggacaccctggagcggctggaccgcgagcacggggacaagttcggccgccgc
atccctactgcctctgactccgcctccaacaacaacggctccacctccgcttccgcacct
gcctccaacaacagtgccagcaatgctgccacggcgaccgcctccaccacctccatcgcc
actcagacgcagtaccgcagcggcctctcgccgtcacctagcaacagctatgccacgtcc
cctccccaggccgtgctgccctcgcccgtctctatcatcggtatcgtgccgaacggtcga
gacgccttggccacgacacccaatgggaagctttcacctcctcgttacccgatgagcgca
gctgccgcagtgagaccgtacgggtttgagggaccagacgaggagatggacattgatgac
aaagtggaggatcttattaggcgggacagcagtatggtgaaggaggagatcaaggcattc
ctggctaatcggcgcatctctcaggcagtggtggctcaggtcacaggtatcagtcagagt
agaatctctcactggctgctgcaacagggttcagatctgagcgagcagaagaagagggcg
ttttatcgctggtatcagctggagaagaccacaccaggtgctactttaaacatgcgcccc
gctccactggccctggaagagattgagtggcgtcagactccacctccaataagtactgcc
cctggtagtttccggctgcgcagaggcagccgtttcacctggaggaaggagtgtcttgct
gtcatggagagctatttcaatgacaaccagtatcctgatgaagccaaaagagaggagatc
gccaatgcctgcaatgctgttattcaaaaaccagggaaaaagctgtctgacttggagaga
gtcacatctttaaaggtgtacaactggttcgctaaccgtcgcaaggagatcaagaggagg
gccaatattgggtcttttttccaagaagccacaatcctggagagccatgggatagacgtg
cagagtcctggaggacattccaacagcgacgacattgacgccagtgactacactgagcag
gggtgtgaaatgccctacttcgagaagagaaccatgactcggccgtttggtttctacagg
cttgagcctacatcccccacacaggatgaaggcaccaatcatgcagaccatcaggaccct
atctccctcgctgtagagatggcagctgtcaatcacagcatcctggctttgtcccgccca
ggggcggtgaccagcgacatcaagacagaggcactggacgatgattaa
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