KEGG   Astyanax mexicanus (Mexican tetra): 103039809
Entry
103039809         CDS       T05042                                 
Symbol
rbbp4
Name
(RefSeq) histone-binding protein RBBP4
  KO
K10752  histone-binding protein RBBP4
Organism
amex  Astyanax mexicanus (Mexican tetra)
Pathway
amex03082  ATP-dependent chromatin remodeling
amex03083  Polycomb repressive complex
amex04218  Cellular senescence
Brite
KEGG Orthology (KO) [BR:amex00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    103039809 (rbbp4)
   03083 Polycomb repressive complex
    103039809 (rbbp4)
 09140 Cellular Processes
  09143 Cell growth and death
   04218 Cellular senescence
    103039809 (rbbp4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:amex03036]
    103039809 (rbbp4)
Chromosome and associated proteins [BR:amex03036]
 Eukaryotic type
  Nucleosome assembly factors
   Histone chaperones
    CAF-1
     103039809 (rbbp4)
  Histone modification proteins
   HAT complexes
    HATB complex
     103039809 (rbbp4)
   HDAC complexes
    Sin3A-HDAC complex
     103039809 (rbbp4)
   Polycomb repressive complex (PRC) and associated proteins
    PRC2.1
     103039809 (rbbp4)
    PRC2.2
     103039809 (rbbp4)
  Centromeric chromatin formation proteins
   Kinetochore proteins
    MIS16-MIS18 complex
     103039809 (rbbp4)
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    103039809 (rbbp4)
  Chromatin remodeling factors
   NuRD complex
    103039809 (rbbp4)
   NuRF complex
    103039809 (rbbp4)
   NuRF complex (fruit fly)
    103039809 (rbbp4)
SSDB
Motif
Pfam: WD40 CAF1C_H4-bd WD40_CDC20-Fz WD40_Prp19 Beta-prop_CAF1B_HIR1 Beta-prop_EIPR1 Beta-prop_RIG_2nd Beta-prop_TEP1_2nd WDR55 Beta-prop_EML_2 WD40_WDHD1_1st Beta-prop_WDR75_1st Beta-prop_EML EIF3I WD40_MABP1-WDR62_2nd WD_LRWD1 Beta-prop_WDR90_POC16_2nd Beta-prop_WDR19_1st WD40_RFWD3 Beta-prop_DCAF12 ANAPC4_WD40 Beta-prop_RIG_1st WD40_MABP1-WDR62_1st eIF2A Beta-prop_IFT140_1st MIOS_WD40 Beta-prop_SPT8 NBCH_WD40 Beta-prop_IFT122_1st Beta-prop_DCAF4
Other DBs
NCBI-GeneID: 103039809
NCBI-ProteinID: XP_007249347
Ensembl: ENSAMXG00000036215
UniProt: A0A8B9LH17 W5LGY4
LinkDB
Position
3:44783543..44789376
AA seq 424 aa
MADKDAAFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKD
YSVHRLVLGTHTSDEQNHLVIASVQLPNDDAQFDASHYDSEKGEFGGFGSVSGKIEIEIK
INHEGEVNRARYMPQNPCIIATKTPTSDVLVFDYTKHPSKPDPSGECTPDLRLRGHQKEG
YGLSWNPNLSGCLLSASDDHTICLWDISTVPKEGKIVDAKTIFTGHTAVVEDVSWHLLHE
SLFGSVADDQKLMIWDTRSNNTSKPSHAVDAHTAEVNCLSFNPYSEFILATGSADKTVAL
WDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAE
DGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQVWQMAENIYNDEDPEGAADT
EVQG
NT seq 1275 nt   +upstreamnt  +downstreamnt
atggctgataaagacgctgcttttgacgatgctgttgaagagagggtgataaatgaagag
tacaagatatggaagaagaacaccccatttctctacgacctggtgatgacccatgccctg
gagtggccgagcctcactgcgcagtggctgccagatgtcacaaggcctgagggtaaggat
tacagtgttcaccgtctggttctcggcacccacacctctgatgagcaaaaccacttggtc
attgccagtgttcagctacctaacgacgatgcccaatttgatgcctcacattacgacagt
gagaaaggagagtttggaggctttggctcagtgagtggtaagatcgagattgagatcaag
attaaccatgaaggagaggtgaacagggcgcgatacatgccacagaacccctgcatcatt
gctaccaagactcccaccagtgatgtgctggtctttgactacaccaagcatccgtccaag
cctgacccctctggcgagtgtactcctgacttgcgattgagggggcatcagaaagaggga
tacggcctgtcttggaatcccaacttaagtggctgcttgctgagtgcatctgatgaccat
acaatctgtctttgggatatcagtacggtgccaaaagagggaaagattgttgatgctaag
accattttcactggtcacactgctgtggtggaggatgtttcatggcatctccttcatgaa
tctctttttggatccgtggctgatgaccagaagcttatgatttgggatacccgttccaac
aacacatccaagcccagccatgcagttgatgcccatactgcagaggtcaattgcctgtcc
tttaatccctatagtgagttcatcttggccacaggttcagctgacaagactgtagcactc
tgggatcttaggaaccttaagctgaagctacactccttcgagtcacacaaagacgaaatc
ttccaggttcagtggtcacctcataatgagaccatcttggcatccagtggaacagacaga
cggctcaatgtctgggatctcagtaaaattggtgaggaacagtcacctgaagatgcagag
gatggtcctcctgaattactgttcatccatggtggtcacacagcaaaaatctcagacttc
tcctggaaccccaatgagccgtgggtgatctgctctgtatctgaggacaacatcatgcaa
gtgtggcagatggcggagaacatttacaatgatgaggaccctgaaggagctgcagacaca
gaggtccagggataa

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