Astyanax mexicanus (Mexican tetra): 103039894
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Entry
103039894 CDS
T05042
Symbol
thoc5
Name
(RefSeq) THO complex subunit 5 homolog isoform X2
KO
K13174
THO complex subunit 5
Organism
amex
Astyanax mexicanus (Mexican tetra)
Pathway
amex03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
amex00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
103039894 (thoc5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
amex03019
]
103039894 (thoc5)
03041 Spliceosome [BR:
amex03041
]
103039894 (thoc5)
Messenger RNA biogenesis [BR:
amex03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
103039894 (thoc5)
Spliceosome [BR:
amex03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
103039894 (thoc5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FmiP_Thoc5
Motif
Other DBs
NCBI-GeneID:
103039894
NCBI-ProteinID:
XP_007244359
Ensembl:
ENSAMXG00000014235
LinkDB
All DBs
Position
2:complement(52834199..52844183)
Genome browser
AA seq
684 aa
AA seq
DB search
MSSDTLKKRKAKVIRSDGGTPETKRGRGEGDQEVRVYNEEVELEGRDPEQDYVLYKSTCD
SLAKLMAEIQELKANGAKEGSEEVEEKLRQGCVHFITLKKLNRLAHMRLKKGRDQTHEAK
QKVDVLHLQLQNLLYEVMHLQKEIGKCLEFKSQHEEIELVSVDDFLRDAPAEISRPHLTK
DDPHQLTLARLDWELEQRKRLAEQYKSSLCSKEKILKGIELKKEYLGSLQPGLHAIMQAS
LPVQEYLSMPFERVQKQAEVARHLPPPLYVLFVQANAYGQACDKNLSVSISGDVDEAKAL
SRPPEDSQDDESDSDAEEEQQNTKRRRATVGVQLDDKRKEMLKRHPLSLCIDLKCKDGSV
LHLFFYYLMNLNILTVKTKVSASADLSGAVSAGELLNSESLLNCLYASDHGQETPNPANR
YQFDKVGIITFADYVSQLGHPYNWVQCLGGLQFSSDRPQAEGACSSLSASHMEATMKLLR
GRLQSRLALHKQFGSLEHSIVPVSSECQHLFPAKVVSRLARWTMMSHQDFLELHFVQHVA
KAGLVKETDLFFMAIVERGTARLQAAVVLNPRYPEITPLFSLSLLWKGERSGRSDDNLRA
MESEVNVFRSELQGPRPGLQLLTNQIQRLCVCLDVYLETESQVCDGSEGPREFPREKMCL
RTARGPNRLKPFKYNHPQGFFSHR
NT seq
2055 nt
NT seq
+upstream
nt +downstream
nt
atgtcttctgacactctgaaaaagcgcaaggcaaaagtaatccggagtgatggcgggact
cctgaaactaaacgaggtcgaggtgaaggggatcaggaggtgcgtgtgtataacgaggag
gtggaattggaaggcagagacccggaacaggattacgtcctttataaaagtacctgtgac
tccttggcaaaactaatggctgaaatacaagaacttaaagccaatggtgcaaaagaagga
agtgaggaggtggaggagaagctcagacaaggttgtgttcatttcattaccctgaagaag
ctgaatcgtttggcacacatgagactgaagaaaggacgtgatcagacgcatgaggcgaag
cagaaagtggatgtgctgcatctgcagcttcagaatcttttgtatgaggtcatgcatctt
cagaaagaaattggcaaatgccttgagtttaagtcccagcatgaggagatagaattagtg
agtgtggatgattttcttcgggatgctccagccgaaatatctcgtccacatctcaccaag
gatgacccccaccagcttacacttgcccgccttgactgggaactggagcagaggaaaagg
ttggctgagcagtacaagagctccttgtgctctaaggaaaaaattctaaaaggaattgag
ctgaagaaagagtatcttggcagtcttcagccaggcctacatgctattatgcaggcctca
ttgcctgtacaggagtacttatctatgccatttgagcgtgtacagaagcaggctgaggtt
gctcgtcaccttcctccccctctgtatgtgctatttgtgcaagccaatgcttatggacaa
gcttgtgataagaatctaagtgtgtcgatcagtggagatgtggatgaagcaaaagccctc
tctagaccacctgaggattcacaagatgatgagagcgattcagatgcagaggaggaacaa
cagaacactaaacgacgacgagctacagttggtgttcagttggatgacaaacggaaagaa
atgctgaaacgacatcctctctcactgtgcatcgacctcaaatgcaaagatggaagtgtg
ttgcatttatttttttattaccttatgaacctcaacatcctgactgtgaaaaccaaagtg
tcagcctctgcagatctctcaggggctgtgagtgctggggagctgctcaactcagagtct
ctgttaaactgcctgtatgcttcagatcatggtcaagaaacccccaaccctgccaaccgc
taccagtttgacaaagtgggcattataacttttgcggattatgtgtctcaacttggacat
ccatacaattgggtgcaatgtctgggagggctgcagttctcaagtgaccgaccacaggct
gaaggagcatgcagctctctcagtgccagtcacatggaagccactatgaagctgctgaga
ggacgactacagtctcgcctagctttacacaaacagttcggctcgctagagcacagcata
gttcctgtctccagtgagtgtcagcatctgttcccagccaaggtggtctctcgtctggcc
cgctggaccatgatgagccatcaggatttcttggaactgcactttgtgcaacatgtggcg
aaggctggcctggttaaggagacagacttgttcttcatggcaatagtggagagagggaca
gctcgtctgcaggctgcagtggtgttaaaccctcgctacccagaaatcacgcccctcttc
tctctttcactgctctggaagggtgagcgcagtggtcgctcggatgacaacctgcgggcg
atggagagcgaggtgaacgtgttcaggtctgagctccagggaccccgtcctggtctgcag
cttctcaccaaccagatccagcgtctgtgtgtgtgtctagatgtgtatctggagactgaa
agccaagtgtgtgatggctcagaaggtccaagagaattcccaagagagaaaatgtgctta
cgcactgccaggggtccaaatcgtctgaagccttttaaatacaatcacccccagggcttt
ttcagtcatcgctga
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integrated database retrieval system
