Astyanax mexicanus (Mexican tetra): 103040056
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Entry
103040056 CDS
T05042
Symbol
taf1c
Name
(RefSeq) TATA box-binding protein-associated factor, RNA polymerase I, subunit C isoform X1
KO
K15214
TATA box-binding protein-associated factor RNA polymerase I subunit C
Organism
amex
Astyanax mexicanus (Mexican tetra)
Brite
KEGG Orthology (KO) [BR:
amex00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
amex03021
]
103040056 (taf1c)
Transcription machinery [BR:
amex03021
]
Eukaryotic type
RNA polymerase I system
Basal transcription factors
SL1/TIF-1B
103040056 (taf1c)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TAF1C_beta-prop
TAF1C_HB
Motif
Other DBs
NCBI-GeneID:
103040056
NCBI-ProteinID:
XP_007234028
Ensembl:
ENSAMXG00000013241
UniProt:
A0A8T2L3A7
LinkDB
All DBs
Position
17:25850010..25881768
Genome browser
AA seq
1028 aa
AA seq
DB search
MANRFPAQLFPHFYQDGPPEHRAKHVYDGWGSYGQILRGDDEPAQGEMEGEMLWGFKAQH
KKKGEMWIPVEPVVTPLLPPNKAGKIPSGPPSSPDNFPEHIQHFHVHHCMDSFSTMGHLL
GEHFNFHKNKPRKGCINMGRMKNVVRRLKYKKCEVRHASSYVHRYHHLLEDVICDIPSAL
LAELLHEELTFQRQQEQFRSDITGGVLGCVPLPNIENQNEICLIYPRGAALDSLNFHRVV
LEFNEGKPSVDMSNTSLVYNLKGTVRQISTVRVDDKGLVGVRSDYSCGTWVIKDGERPRP
LEVIQLKEPCTSLNVSPHICGEFVVASESGSAYLWTVGKRPQKFRDEKTNLYFNDKSDWR
WCEFSAHPRVMVFADRTGAELTDSRSSDCSHTLFRIGKTAGCKSGERLIVSKYMGEVHPY
HHLFTTQFSAYILDERMPSIPALKWEHMMESPPCFARVLPALDSSTSTKILLGAQRAQET
VLLNYTGGCEQPCQSDGPLQKLYSPCEGLKHQLLPHKQQEVEKRLGVLAAGLTATQSNGF
LTVFQFTEAGDLFSQTLKLHLDTTSSQKDLSAANCDIDLVDLPSKDKPAEEPRKDSIPQE
TSTVSEEEQLLDSDFEQELRQRMLSQLEVVTNDDQDGSLTSDTEVRISCEPAPVPESSVD
IAQNIQTRSVRPADPENASEELKLIWKKWLNSLLDLNTRKKRSLKHRRLKTNDIQVKVHR
RDQLKEKERFQKLRNGLNDALKNKKLFVHGGSCLPPLDITPVPDTVDPSDWLDDLSQRLS
ASWAGGWKNWWEDKLGLNRDSKIQALRRKRRQEKRARARYRVALSGSFTSSTSYQDTLSG
WSSSTSQYLGSDSESFATSQSAAEDIPLSEPETLPKSPVVEEFPRSEGTACSSQAIESIK
PFSHTSERLELDHALPISQNQNQKHLPKKVSTVETQSVLSPLQMLKESLYSQQRQSRQQL
QKDYLSSLFGSQEPSQHPVEVHDNSQLSSSGTLRMQSSGYSLAMQRLSQNRSSSQASQPQ
KKKSRMGF
NT seq
3087 nt
NT seq
+upstream
nt +downstream
nt
atggcgaaccgattccccgctcagctcttcccacatttctaccaggacggacctccagaa
catcgagctaaacatgtttatgacggctggggctcctacggacaaatactgcggggagac
gatgagccagctcagggtgagatggagggggaaatgctgtgggggttcaaggcccagcat
aagaagaagggagaaatgtggatccctgttgagccagtggtaaccccattgctgcctccc
aataaagctggcaaaatcccctcaggcccaccttccagtccagataatttcccagagcat
attcagcatttccatgtacatcactgtatggattccttctccaccatgggtcatctgctt
ggagaacacttcaactttcataaaaacaaaccacgtaagggttgcatcaacatggggaga
atgaagaatgtagtaagaagattaaagtataaaaagtgtgaagtcaggcatgcttcaagc
tacgtgcatcgctaccaccacctgctggaggacgtgatctgtgacattccatcagctctt
ctggctgagcttcttcatgaggagttgactttccagaggcagcaggagcagttccgctca
gatatcaccggaggtgttctaggctgcgttcctcttccaaacatcgagaatcaaaatgag
atctgtctgatctatcctagaggagcagcactggactctctcaatttccaccgggtggtg
ctggagttcaacgaggggaagcccagtgtagatatgagtaacacgtctctggtgtataat
ctgaaagggacagtccggcagatcagcacagtcagagtggatgataaaggtttggtcggt
gtgcgctcggattactcctgtggtacgtgggtaataaaagatggtgagcgtccacggcct
ttagaggtaatccagctgaaagagccctgcaccagcctcaacgtcagtcctcatatttgt
ggagaatttgtggtagccagcgagagtggatcagcctatctttggactgtgggaaaacgt
ccacagaagtttcgagatgaaaaaacaaacctgtacttcaacgataagtcggattggcgg
tggtgtgagttttcagcacatccgagggtgatggtttttgctgacaggactggagcagag
ctcacagacagccggagcagcgactgttctcacactcttttccggattgggaagacagcc
ggctgtaaaagcggggaaaggctgattgtatccaagtatatgggcgaggtccatccctac
caccaccttttcaccacacagttctcagcgtacatcctggatgagcgaatgccaagtatt
cctgcactgaaatgggagcacatgatggagtctcctccatgttttgcccgtgttttacca
gcactggattctagcacctcgaccaaaattctcctgggggctcagagagctcaggagact
gtgctgcttaattatacaggaggatgtgagcagccatgtcagtcagatggtccgcttcag
aagctctacagtccgtgtgaaggtttaaagcatcagctgctccctcacaaacagcaagag
gtggagaagagactgggagtacttgctgcaggcctgactgcaacccagagcaatggcttc
ttgactgtcttccagttcactgaagctggagacttattctcccagacgcttaagttacat
ttggacacaaccagctctcaaaaagatctatctgcagcaaactgtgacatagatttagta
gacctgccatccaaggacaaaccagctgaggaacctcgaaaagactctattccgcaagaa
acctcaactgtatccgaagaggagcagcttttggacagcgattttgaacaagagctaagg
cagcgaatgctgagccaactagaagttgtcaccaatgatgaccaggatggttctctcact
tcagacacagaagtaaggattagctgtgaacctgcccctgttcctgagtcatcagttgat
atagcccagaacatccagactcgttcagtaagaccggcagacccagagaatgctagcgaa
gagttaaaacttatctggaaaaaatggctaaactctcttctagatctgaacacaagaaag
aagcgaagcctgaaacataggcgtctcaagaccaatgatatacaggttaaagtccatcgc
agagatcagcttaaggagaaggagaggtttcagaagttgaggaacggcctaaacgatgcc
ctgaagaacaaaaagctgtttgttcacgggggttcctgcttgcctcctctagatatcacc
cctgttccagacacagtggacccgtcagactggttggatgaccttagccagcggttaagt
gcctcttgggcaggtggctggaagaactggtgggaagataagcttggcctgaaccgagac
tccaagatccaagctttacgcaggaaacgcagacaggagaagcgtgccagagcccgatac
cgtgtggcactttccggaagtttcacctcgtctaccagctatcaggacactctttcaggg
tggtcttcttctaccagtcagtatctgggttctgactcggaaagctttgcaacttctcag
agtgctgcagaggatattccactgtcagaacctgagacactacccaagagccctgttgtt
gaggaattccccaggagtgagggcacagcgtgttcctcacaagctatagaatcaataaaa
cctttttcacatacttcagaaaggcttgaactggaccatgccttgcctatttctcagaat
caaaaccagaaacatcttcctaaaaaggtttctactgttgagactcaatctgtgctatct
cccttacaaatgttgaaagaatcactctacagccagcagaggcaaagtcgtcagcagcta
caaaaggactacctcagctctctgtttggctctcaggaaccgtcccaacaccctgtggag
gtccacgacaacagccaattgtcgtcctcaggaactctaaggatgcagagctcaggttac
tcgcttgcaatgcagcgtctatctcaaaacaggtcgtcctcacaggcctcccagcctcag
aaaaagaagtctcggatgggattctga
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integrated database retrieval system
