Astyanax mexicanus (Mexican tetra): 103040087
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Entry
103040087 CDS
T05042
Symbol
dhx16
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
amex
Astyanax mexicanus (Mexican tetra)
Pathway
amex03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
amex00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
103040087 (dhx16)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
amex03041
]
103040087 (dhx16)
Enzymes [BR:
amex01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
103040087 (dhx16)
Spliceosome [BR:
amex03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
103040087 (dhx16)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
WHD_HA2
DEAD
AAA_22
PWI
AAA_19
AAA_30
Cas3-like_C_2
Flavi_DEAD
nSTAND3
Motif
Other DBs
NCBI-GeneID:
103040087
NCBI-ProteinID:
XP_007238873
Ensembl:
ENSAMXG00000005181
UniProt:
A0A8B9HGW5
A0A3B1ISC7
LinkDB
All DBs
Position
18
Genome browser
AA seq
1053 aa
AA seq
DB search
MANLEQWVSDRLHDILGLSDRYVAQFMIGLVQKSSSSQDFLARLEHTGTIDIDQRVTAFA
QELYNKIPKKQVVEKPARAVERQAIEMDRKNRTYTLLEDSDSDGDTVKEKGKEKKSKDKD
RGKKRKHLRQKQDDGSSSEEDRKKSTKVTSQDSKTGVKEDDEEEWEKEERERLQDLEERD
AFAERVKQRDKEKTRHILERNDKKAYEEAQKRLKMAEEDQKKMLPELRKQSRWDYLAKRE
QEKLEDLEAEILDEEYLFSSDNLTDRERKELDYKRQIRDLARDYKTAGAKEKEERKNRYY
MPEENRKKSIPQRDLELEFEETPREGGGEQGRWEEARVATATLQFGAKAERERRLKEEKE
KYQLVLEEEEMINFVSTAITMKGTQSEKDIEPELSQAEKQKQSIQEVRRSLPVFPYRQDL
LNAIRDHQILVIEGETGSGKTTQIPQYLMEDGYTKGGMKIGCTQPRRVAAMSVSARVAQE
VGVKLGNEVGYSIRFEDCTSERTVLKYMTDGMLLREFLTEPDLASYSVIIIDEAHERTLH
TDILFGLIKDIARFRPDLKVLVASATLDTERFSCFFDDAPVFRIPGRRFPVDIFYTKAPE
ADYLDACVVSVLQIHVTQPPGDILVFLTGQEEIESCCENLQERCRRLGSKISELLVLPIY
ANLPSDMQAKIFNPTPPGARKVVVATNIAETSLTIDGIIYVIDPGFCKQKSYNARTGMES
LIVTPCSRASANQRAGRAGRVAAGKCFRLYTAWAFKHEMEETTVPEIQRTNLGNVVLLLK
SLGINDLIHFDFMDPPPHETLVLALEQLYALGALNHLGELTKLGRRMAELPVDPMLSKMI
LASEQYKCSEEVLTIAAMLSVNNSIFYRPKDKVVHADNARMNFIVPGGDHLVLLNVYTQW
VESGFSTQWCFENFIQFRSMKRARDVREQLEGLMERIEVEVCSANGDSTPIRKSITAGYF
YHTARLSKGGYKTVKHQQTVYVHPNSSLFEEQPRWLIYHELVFTTKEFMRQVIEIDSAWL
LEVAPHYYKSKELEDSTNKKMPRKQGKAREELG
NT seq
3162 nt
NT seq
+upstream
nt +downstream
nt
atggctaatcttgagcagtgggtgagtgacaggcttcacgacatcttgggcctgagcgac
cggtacgtggcccagtttatgatcggccttgtgcagaagtcctcgagttcacaggatttt
ttggctcgtctggagcacaccggcaccattgacatcgaccagagagtcactgctttcgca
caggagctatataacaagatcccaaagaaacaggttgtggagaaacctgcgagagcggta
gagcgtcaggccatcgagatggacaggaagaaccgaacatacaccctcctggaggacagt
gacagtgatggagatactgtcaaagaaaaagggaaagagaagaaaagcaaagataaagat
agagggaagaagagaaagcacctaagacaaaaacaagatgacggttcatcaagtgaggag
gacagaaaaaagagcacaaaagtaacatcccaagattcaaagacaggagtaaaagaggat
gatgaagaagagtgggaaaaggaggagcgagagcggttacaagatctggaagagagagac
gcatttgcagaaagagtcaagcagagagacaaagaaaagactagacatatacttgaaaga
aacgataagaaggcatatgaggaggctcagaagagacttaagatggctgaagaagatcag
aagaaaatgctccctgagcttcgaaaacagtcacgatgggattacctggccaagcgtgag
caggagaagctggaagacctggaagcagagattttggatgaggagtacctcttctccagc
gataacctcactgacagggagaggaaagagctagactacaagagacagatcagagacctg
gcacgagactacaagacagctggagcaaaggagaaagaggagagaaagaaccgctactac
atgccagaggagaacagaaagaagtccatacctcagagagacctggagctggagtttgaa
gagactccccgcgaagggggtggggagcagggccgatgggaggaggcgcgggtcgctacc
gcaaccttacagtttggagcaaaagcggagagagagcgacggttaaaggaggagaaagag
aagtaccaattagtgctggaggaggaggagatgattaactttgtaagcactgctatcacc
atgaagggaacacaatctgaaaaggatattgagcctgagctctctcaagctgagaaacag
aaacagtccattcaggaagtgaggcgcagtctgccagtgtttccctacagacaagacctc
ctcaatgccatcagagaccaccagatccttgttattgagggtgagactggctctggaaaa
accacccagatccctcaataccttatggaggatggttataccaaaggagggatgaaaatc
ggctgcacccagcctcgaagagtagcagccatgtctgtatcagccagagtggcacaagaa
gtgggagttaagctgggaaatgaggtgggctatagtatcagatttgaagactgcacatct
gaacgcactgtgctgaagtacatgactgatggaatgctgctaagagagtttctcactgaa
ccagacttggctagctacagtgtaatcattattgatgaggcccatgaaaggactctacat
acagacatcctgtttgggctaatcaaagacattgcaaggttccgtccagatctgaaggtg
ctggtggccagtgctactctggacactgagcgcttctcctgcttcttcgacgatgcaccg
gttttcaggataccaggtcgcaggtttcctgttgatatcttctatactaaggctccagag
gctgattatcttgatgcatgtgtggtatcagtactgcagatccatgtcacgcagcctccg
ggagatattcttgtgttcctcactggacaggaagagattgagtcttgctgtgagaacttg
caggaaagatgcagaaggcttggctctaagatctctgagcttctagttctccccatctat
gccaacctgccctcagacatgcaagccaagatttttaaccccacccctcctggagctcgc
aaggttgtggtggctacaaacatagcagaaacctctctcactattgatggcatcatctat
gtgattgatccaggcttctgcaaacagaaaagctataatgcccgaacagggatggagtct
ctgattgtcacaccatgctcacgggcctcagccaaccagcgggcaggtagagctggccga
gtggctgctgggaaatgttttaggctctacacagcctgggccttcaaacacgagatggag
gaaactacagtgcctgagattcaaagaaccaatctgggcaatgtggtcctgctcctaaag
agtctgggtataaatgatctgatccattttgacttcatggacccccctccacatgaaacc
ctggtgttagctctggaacagctctatgccctgggtgccttaaaccatcttggagaactt
acaaagctgggaaggaggatggctgagctgccagtagaccccatgctgagtaaaatgatc
ttggcctctgaacaatacaagtgctcagaggaggtgctaaccatcgctgccatgttgtca
gtcaacaactctatcttttaccggccaaaagacaaagtggtgcatgcagacaatgcccgc
atgaacttcatagtgccagggggagaccatctggtgctcctaaatgtatatacacagtgg
gtggagagtggtttttccactcagtggtgttttgagaacttcatccagttccgttccatg
aagcgtgcacgagatgtgcgggagcagctggaaggtttgatggaaagaattgaggtggag
gtgtgcagcgctaacggtgacagcactcccatccgcaagtccatcactgcaggttatttc
taccacacggcccgtctgagtaagggaggctacaaaacagtgaaacatcagcagacggtg
tatgtgcaccccaacagctccctgtttgaggaacaacctcgctggcttatctaccatgag
ctggtcttcaccaccaaggagttcatgagacaagtgattgagatagacagtgcctggctg
ttggaggtggccccccactactacaagagcaaagagctggaggacagcaccaacaagaaa
atgcctcgcaaacagggcaaagctcgagaggaactgggctga
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integrated database retrieval system
