Astyanax mexicanus (Mexican tetra): 103040126
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Entry
103040126 CDS
T05042
Symbol
ddx3xa
Name
(RefSeq) DEAD-box helicase 3 X-linked a isoform X5
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
amex
Astyanax mexicanus (Mexican tetra)
Pathway
amex04622
RIG-I-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
amex00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
103040126 (ddx3xa)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
amex03019
]
103040126 (ddx3xa)
03041 Spliceosome [BR:
amex03041
]
103040126 (ddx3xa)
03036 Chromosome and associated proteins [BR:
amex03036
]
103040126 (ddx3xa)
Enzymes [BR:
amex01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
103040126 (ddx3xa)
Messenger RNA biogenesis [BR:
amex03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
103040126 (ddx3xa)
mRNA cycle factors
Common to processing body (P body) and stress granule
103040126 (ddx3xa)
Spliceosome [BR:
amex03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
103040126 (ddx3xa)
Chromosome and associated proteins [BR:
amex03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
103040126 (ddx3xa)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
Motif
Other DBs
NCBI-GeneID:
103040126
NCBI-ProteinID:
XP_007227913
Ensembl:
ENSAMXG00000032415
LinkDB
All DBs
Position
11:complement(5883060..5903838)
Genome browser
AA seq
729 aa
AA seq
DB search
MSHVVVDSSHGLDQQLCVLDLNSADVQGGGTGKRYIPPHLRNKDIAKNAGNAYSAGRQSG
YSMPPVLSYSPGWDAARSNGFVNGYHDTRMNGGANFGRGPPRNDRGGRGSFRGNRGSATF
TQPIHNTTFVGFENKDVGWNAAINRDAYSSFGARSDRGKPAFFNDRGTGSRGRYERGGFG
GGAGMVNTRWVEESRDEEDWSKPTPPNERVEHELFSASNTGINFEKYDDIPVEATGNNCP
GPIENFHDVDMGEIIMGNITLSRYTRPTPVQKHAIPIIKAKRDLMACAQTGSGKTAAFLL
PVLSQIYTDGPGEALQASKASGQENGKYGRRKQYPISLVLAPTRELALQIYDEARKFAYR
SRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDYCNYLVLDEADRM
LDMGFEPQIRRIVEQDTMPPKGARQTMMFSATFPKEIQILARDFLEEYIFLAVGRVGSTS
ENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADALEDFLYREGYACTSIH
GDRSQRDREEALHQFRSGRCPIMVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRT
GRVGNLGLATSFYNDKNSNITKDLLDILVEAKQEVPSWLESLAFEHQHKNSNRGRSKRFS
GGFGARDYRQMSGGGNAFGNRGARNPGGHGGNRGFGGNKGGFGNFVSDGYGGSYGNYGGN
YTQVDWWGN
NT seq
2190 nt
NT seq
+upstream
nt +downstream
nt
atgagtcatgtggtcgtcgacagctcacacggtctagatcagcagctttgtgttctagac
ttgaactctgctgacgtgcagggtggaggcaccggcaagcgttacattcctcctcacttg
agaaacaaagatattgctaaaaatgcaggaaatgcttattccgctggtagacagagcggt
tattcaatgccaccagttctgagctactctcctggctgggatgctgcacgtagcaatggc
tttgttaatggataccatgacactcgcatgaatggaggtgcaaactttggacgtggtcct
cctcgcaatgaccgaggtggccgtggaagcttcagaggcaacagaggcagtgcgaccttc
acccagcctatacacaacacaaccttcgtaggctttgagaacaaagatgtgggatggaat
gcagctataaacagagatgcttactccagctttggagcacgttctgacagaggaaagcct
gccttctttaatgaccggggtacaggatcacgaggaaggtatgagcgtgggggtttcggt
ggtggtgcaggaatggtaaacactcggtgggtagaagagtccagggatgaggaggactgg
tcaaagcctaccccacccaatgagcgtgtggaacatgagctgttttctgcaagcaacacg
ggaattaactttgagaagtatgatgacattcctgtggaggccaccggaaacaattgtcct
ggccctattgagaatttccatgatgttgacatgggggagatcatcatgggcaacataact
ctgagccgctacactcgtcccactcccgtgcagaagcatgccattcccataatcaaggcc
aagagggaccttatggcctgtgctcaaacaggctctgggaagactgcagcgttcctgctc
ccagtgctgagtcagatctacactgatggacctggagaagccctgcaggcttctaaagct
agtggtcaggagaacggaaaatacggccgccgcaagcagtatcccatctctttggtcttg
gctccaaccagagaacttgctctacagatttatgatgaagcccggaagtttgcataccgc
tctagagtccgcccgtgtgtggtgtacggtggggctgacattggccagcagatccgtgac
ctagagagaggctgtcatctgctggtggccacacctggacgtctggtagacatgatggag
cgtggcaagattggcctggactactgcaattacctggttctggatgaggctgacagaatg
ctggacatgggcttcgagccacagatcagacgtatagtggagcaggacaccatgcctccc
aaaggcgcacgtcagactatgatgttcagcgctacatttcccaaggaaatccagatattg
gcacgtgacttccttgaggagtacattttcctggccgtgggccgcgtgggatccacttca
gagaacatcacccagaaagtggtctgggtggaggagagcgacaagcgctcgtttttgctg
gacctgcttaatgccacaggcaaggattctcttacactggtgttcgtggagactaagaaa
ggtgcagatgctctcgaggactttctttatcgcgagggctatgcctgcaccagtatccat
ggcgaccgttctcagagggatcgtgaggaagcgcttcaccagttccgctctgggcgttgc
cctattatggtcgccacagctgtggcagcccgtgggcttgatatcagcaatgtgaagcat
gtcatcaactttgacttgcccagtgacattgaagaatacgtccatcgtattgggcgtact
gggcgtgtgggaaaccttggtttggccacttctttctacaatgataagaacagcaacatc
accaaagacctgctggacattttggtggaggccaaacaggaggttccttcctggctggag
agtttggcttttgagcaccagcacaagaacagcaaccgtggacgctccaagaggttctct
ggaggttttggggccagagattatcgtcagatgtctgggggcggcaatgcctttggcaac
cgtggtgctcgcaacccaggaggccatggaggaaaccgaggttttggagggaataagggt
ggctttgggaattttgtgagcgatggctacggtggaagttacggcaactacggagggaac
tacacccaagtggactggtggggcaactaa
DBGET
integrated database retrieval system
