Astyanax mexicanus (Mexican tetra): 103040213
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Entry
103040213 CDS
T05042
Symbol
hfm1
Name
(RefSeq) probable ATP-dependent DNA helicase HFM1 isoform X1
KO
K15271
ATP-dependent DNA helicase HFM1/MER3 [EC:
5.6.2.4
]
Organism
amex
Astyanax mexicanus (Mexican tetra)
Brite
KEGG Orthology (KO) [BR:
amex00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
amex03036
]
103040213 (hfm1)
Enzymes [BR:
amex01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
103040213 (hfm1)
Chromosome and associated proteins [BR:
amex03036
]
Eukaryotic type
Meiosis-specific proteins
Others
103040213 (hfm1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec63
DEAD
SNRNP200_wHTH
ResIII
Helicase_C
DEXQc_Suv3
Motif
Other DBs
NCBI-GeneID:
103040213
NCBI-ProteinID:
XP_049323061
Ensembl:
ENSAMXG00000006108
LinkDB
All DBs
Position
18:complement(40857476..40887377)
Genome browser
AA seq
1461 aa
AA seq
DB search
MAECEDFTLPLDSLFFVKPVVHKVNPLCQEQNVWQLDAPPSVSEIPATQAIQKEAECMSS
VGCSQKIRKFLPPFQRPFVSAGVQDQIQADETGSHEMLRMQTSQTPSARKCSNHAFPGTQ
EFDITVKTRPCHPTATPLFKTRLFKPPMRMDLKSFSISSQTNSSVDDHSLSGVAMVTEHP
PAAHAIATCSPFLDPGQIEECNSPQQKHDSGVKKAHVLPLTPKPIHIQGPSGPEMLRPVA
EISAKFRGVFKEFPYFNYVQSKALDDILYTSKNFVACAPTGSGKTVLFELAIIRLLMETT
EPWHNVKAVYMAPIKALCSQQYENWKLKFGPLGLNCKELTGDTEIEDVFEIQDAHLIMTT
PEKWDSMTRKWKNNCLLQSVQLFLIDEVHVVKDSTRGPTLEVVVSRMKTIHSYTVAESPD
ASTRMRFVAVSATIPNICDIADWLSNDQGPATCLEMDESHRPVKLRKVVLGFPFGNSQNE
FKFDLSLNYKMASVIQTYSDQKPTLVFCSTRKGVQQSATVLAKDARFIMSIDHRQRLMKY
ASSILDAKLRDLIMCGVGYHHAGVSLSDRKVVEDAFTAGDLPVLFTTSTLAMGVNLPAHL
VVIKSTMHYAGGSCEEYSEADMLQMIGRAGRPQFDTSATAVIMTRIQNREKYLQFISGSE
TIESSLHTNLVEHLNAEIVLHTISDVNMALDWIRSTFLYIRALKNPTHYGFSSELDKCGI
ETKLQELCLKNLNSLASYQLITMDEDINIKPTESGKLMARYCVAFDTMKQFSKLTGTENL
AELIEMMSKGKEFSDVQLRVNEKRTLNTLNIDKNRVTIRYPMEGKIKSKDMKVNCLIQAQ
LGNLPIQEFGLTQDTGKIFRSGVRISKCLAEFLSHHSKQNFSAQLNSLILAKCFRAKLWE
DSPYVSKQLDKIGLSLATAMVNAGLTSFSKIEATNPRELELIVNRHPPFGNQIKEAVSKL
PKYEIRLEQLPKYSVSTAEILVTVNLKNFEELLTKRTAPDHHYVTLIIGDCDNNVVFQQK
IQDTVLLKSGSWSRKIEVTRTSQEDKISINLISSEYVGLDIQQTFTAFYYGAKTFRAESY
GKETPVYKLQKIPETSQRATSSALKSNMAPPRAQSTVQRAPTKTEPGKRECNHFCKNKDL
CGHDCCKVGIQLVMKRPQNPENSFSSYLRDLKTRNEKLLETPVKRLKMRMNAEAENISMP
QFSFSRRETMPAHTRFEESQDYPPSVSHSMEPQQGFAISAEASFNEDFKDFHHETEGTVE
EQMFQTDANNTFQNAYTSRIALERQMSRIPAHKSRDHTTSSCLDHSTDNISAFDGLNVTF
DLAIDDWDDFDDDNLVLASDVSYSTEKQGGQCVQSTAGTQDCWTSAPSGCSEPRHGLLRP
NQITRVGPTTTVQETQREIPEISAIKHPSLNLNETETLPRGRLDFFSKRDPAQDTQKGFG
RDQKEENKEADMFVSIFDGIF
NT seq
4386 nt
NT seq
+upstream
nt +downstream
nt
atggcagagtgtgaggacttcactttaccactagacagcctgttctttgtcaagccagtg
gttcataaagtgaacccattatgtcaggagcagaatgtatggcagcttgatgctccacca
tccgtttcagaaataccagcaacccaagccatacagaaagaggcagaatgcatgtcttca
gttggttgctctcagaagataagaaagttcttgccccctttccaaagaccctttgtcagt
gctggagtccaagatcaaatacaggcagatgaaacaggaagccatgagatgttgaggatg
cagacgtctcaaacaccttcagctagaaaatgcagcaatcatgccttccctggtacacag
gaatttgatatcactgtgaaaaccagaccatgtcatcccactgccactccactatttaag
actcggctgttcaagccccccatgagaatggacttaaaaagcttcagtatctcaagtcaa
acaaactcctcagtggatgaccacagcctcagtggggtcgctatggtaactgagcatcct
ccagcagcgcacgctattgctacctgtagccccttcctggatccaggccagattgaggaa
tgcaattctccacaacaaaagcacgactctggtgtgaaaaaagctcatgtcctccctttg
acacccaagcccattcatatacaaggaccatctggaccagagatgcttcgtccagttgct
gaaatttctgctaaatttagaggtgtcttcaaagagttcccctacttcaactatgttcag
tccaaagctctggatgatatcctgtacaccagtaagaactttgttgcatgtgctcccact
ggctcagggaagactgtgctctttgagttggctattattcgactgctcatggagactaca
gaaccctggcacaatgttaaagctgtctacatggcaccaattaaagccctttgcagtcag
cagtatgagaactggaagctgaaatttggacctctaggacttaattgcaaagaattgact
ggagacactgagatagaggatgtttttgagatccaggatgctcatcttatcatgacaaca
ccagaaaaatgggacagtatgacgaggaagtggaagaataactgtctcttgcagtcagtt
cagctgttcctcattgatgaggtgcatgtggtgaaagactcaactcgaggtcctaccctg
gaggttgtggtcagcagaatgaaaaccatacactcttacaccgtagctgaaagtccagac
gcttcaacccgcatgagatttgttgctgtctctgccaccatccctaacatatgtgacata
gctgattggttatcaaatgaccagggcccggccacatgtttggagatggatgagagtcac
aggcctgtgaaactgaggaaggttgtcctgggattcccatttggaaacagccaaaatgaa
ttcaagtttgacctctctctgaactacaaaatggccagtgttattcagacctactctgat
cagaagcccacactggtgttttgctccacgaggaaaggagttcagcagtctgctacagtg
ctcgccaaggatgccagattcataatgagtattgatcacagacagcggttaatgaaatat
gccagctctattctggatgcaaaactcagggatctaattatgtgtggtgttggatatcac
catgctggcgtcagtttgtcagacaggaaggtggtcgaggacgcatttactgctggtgac
ttacctgtcctctttactaccagcactttggcaatgggtgtgaacctgccagctcacctg
gtggtgatcaagtctacgatgcactatgctggggggtcgtgtgaggagtacagcgaggct
gacatgctccagatgattggcagagcaggcagaccacagtttgatacctcagccactgct
gtgatcatgaccagaattcagaaccgagagaagtatttgcagttcatcagcggatcagag
acaatagagagcagcttgcatacaaacttggtggagcacttgaatgctgagattgttctt
cacaccatctctgacgtgaacatggctctagactggatccgttccacttttctctatata
cgggccttgaagaatcccacacattatgggttttccagtgagcttgacaaatgtggaatt
gagaccaaactgcaagaactttgtttaaaaaacctgaactccctggcctcatatcagtta
atcacaatggatgaagacataaacatcaagcccacagagagtggaaagctcatggctcgg
tactgtgttgcatttgacacaatgaagcagttcagtaaactgaccggtacagaaaatttg
gcagagctgattgaaatgatgtcaaaagggaaggagtttagtgatgttcagctgagagta
aatgagaagagaacgctgaacacactgaacatagataagaaccgagtcaccatcaggtat
cccatggaaggaaagatcaaaagtaaggacatgaaagttaactgtttgatccaagctcag
ctgggaaaccttccaattcaggagtttggactgacgcaggacacggggaagatattcagg
agcggagtccgaattagcaaatgcctggcagaatttctcagtcatcactccaagcagaat
ttctccgctcagctcaactccctgattttggcaaagtgcttcagagccaagctgtgggaa
gattctccctatgtgtccaagcagctggataagataggcttatctctagcgactgcaatg
gtgaacgcagggctgacgtccttcagcaagattgaagctaccaatcccagagaactggag
ctgatcgtaaatcgacaccctccatttggaaaccagatcaaagaagccgtcagcaaactt
ccaaaatatgaaattcgcctggaacagcttccaaaatacagtgtctctacagcagagatt
cttgtcacagtgaacctgaagaactttgaggaacttcttacaaaaagaactgcaccagac
caccattatgtgaccctcattatcggggattgtgacaacaatgtagtcttccagcagaag
atacaagacactgtgcttcttaagtctgggagctggtccaggaagattgaagttacaaga
acatctcaggaagacaagatcagcatcaatttgataagctctgaatacgtgggactggat
atccagcagacattcactgctttctattatggagcgaagacattcagggctgaatcgtac
ggtaaggagactccagtgtacaagcttcagaagattccagaaacgtcacagagagccacc
agctcagcgctgaaaagtaacatggccccaccgagagcccagagcacagtgcagagagct
cctaccaagactgaacctggcaaaagagagtgcaaccatttctgtaagaacaaggatctt
tgtggtcacgactgctgcaaagttggaatacagttggtgatgaagaggcctcagaatcca
gagaacagcttttcatcctatctgagagatctaaagacgaggaacgagaagctcctagag
actcccgtcaaacgcttgaagatgaggatgaatgctgaggcagagaacatcagcatgccg
cagttctccttctcacgcagagaaacaatgccagctcacacaaggtttgaggaaagccag
gattatcctccaagtgtgtctcacagcatggagccacagcagggttttgccatatctgca
gaggcatcatttaatgaggactttaaagactttcatcatgaaacagaaggcaccgtggag
gaacaaatgttccagactgatgccaacaatacttttcaaaatgcctacacaagcagaatt
gctttagagagacagatgagcagaatccctgctcataaaagcagagatcacaccaccagc
tcatgtctagaccacagcacagacaacatctccgcatttgatggcctcaacgtgaccttt
gacctagcgatagatgactgggatgattttgatgatgataacttggtgcttgctagtgat
gtttcttacagtactgaaaagcaaggtggccagtgtgttcagtcaacagcaggtacacaa
gactgttggacatcagctccttctggttgttcagagcctaggcacgggttgttaagacct
aaccaaattacaagggtcggacccacaactactgtgcaagaaactcagagagaaatccct
gaaatatctgcaataaaacatccatccttaaatctgaacgagacagaaaccctcccgaga
ggccgactggattttttctccaaaagagacccagcgcaagacacacagaaaggttttggc
agagatcaaaaggaggagaacaaagaggctgacatgttcgtcagtatatttgatgggatt
ttttag
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integrated database retrieval system
