Astyanax mexicanus (Mexican tetra): 103041520
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Entry
103041520 CDS
T05042
Symbol
acin1a
Name
(RefSeq) apoptotic chromatin condensation inducer in the nucleus isoform X1
KO
K12875
apoptotic chromatin condensation inducer in the nucleus
Organism
amex
Astyanax mexicanus (Mexican tetra)
Pathway
amex03013
Nucleocytoplasmic transport
amex03015
mRNA surveillance pathway
amex03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
amex00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
103041520 (acin1a)
09122 Translation
03013 Nucleocytoplasmic transport
103041520 (acin1a)
03015 mRNA surveillance pathway
103041520 (acin1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
amex03019
]
103041520 (acin1a)
03041 Spliceosome [BR:
amex03041
]
103041520 (acin1a)
Messenger RNA biogenesis [BR:
amex03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
103041520 (acin1a)
Spliceosome [BR:
amex03041
]
Complex C
Other components
EJC/TREX
103041520 (acin1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Extensin_1
RRM_1
Motif
Other DBs
NCBI-GeneID:
103041520
NCBI-ProteinID:
XP_049338261
LinkDB
All DBs
Position
8:complement(51198465..51232960)
Genome browser
AA seq
2010 aa
AA seq
DB search
MADLEDVTLDGRPLQSLRVADLKAALEERGLSKSGQKNALVKRLKGALMLENLQKTSTHH
TGLQPNSQIGEEMSQNSFIKQYLAKQQELLRQRLEREAREAIETDDHEDHGETNDNNICS
ASNEDTAAEVIDQNKPAAPVGEGFVATRRGNAHRERDIPIHPSPSAPRQPDAESPSSVRV
RRGRDFKSASSHVPVDSDEDNEAGEDNDEEEEWNMAAQQSKRAKMPKTRPVRERSGSSRQ
PQPPPHRPLLSQPLRQPTPPPSPPPELSFPLPDTPKQSPPSPELSPRQQTSSTSGSESSS
SSSRSSSPEPGSDHTERKPGPLSLLAQKMESEGAFSGAGRGGRVEDEAGADVLSAFAGKG
HPGTVSAITHTANATQRKRSLKRDRLAREEAMEREESERVLQREREENEKALERERLERQ
LALEQEKLEKELEREQALERERLEKERLERERLEKERLEKERLKRERLEKERLEKERLER
ERQEKERLEKERMERERLEKERLEKERLEKERLERERLEKERLEREKLERERLEKERLEK
EHLERERLEKERLERERLEKERLEKERLEKERLEKERLEKERLEKERLEKERLEKERLEK
ERLEKERLEKERLEKERLEKERLERERLEKEKLEKERFEKERLEKERLEKERLERERLEK
ERLEKQRLEKERLEKERLEKERLEKERLEKERLEKERLEQERLEKERLEQERLEKERLEQ
ERLERERLEQERLEKERLEKENLEKERLEKERLEKERLEKERLEKERLEKEKLEKERLEK
EKLEKERLEQERLEKERLEQERLEKERLEQERLEKERLEQERLEKERLEQERLEKERLEQ
ERLEKERLEQERLEKERLEKEKLEKERLEKEKLEKERLEKEKLEKERLEKEKLEKERLEQ
EQLEKVRLEQERLERERLEQGRLEKERLEKEQALKKERLEKEQALEKERLEKEQALEKEQ
LEKERLEREQALEKETLVNELALEKERLEREQAQEMARLEKERLEQNEREEALEKERLKK
EEALEKERQEKERLEREEALKKERQEKERLEREEALEKERLEREKALEKERLEREEALEK
KRLEKQRLEREEALEKERLAREAALEKERLEREEALEKERLEKERLEREEALEKERLEKE
RLAREEALEKERLALEKERLAREEALKKERLEKERLEREEALEKERLEREEALKNEKERV
EQMQAFEKDRLKREALENERVDRVQPLEKAQSPQSSSKKLHIFKDPVKDVSLPQPLSTCP
TRPNNQDGNSTEADVSLQTKSPKDENDRGLVPKASLLTSSHKTGSQNESHKQVDHEVPKD
ENNVQKTSSDSHSSPEQQEREEKKKRVRKDSSSSDSSSDSDSESSSSSSSSGSSSSSQDK
CSTIDDLRSEKAKGIKGKESQEKEIMDQHKDVAPKHRKYSFTEEQDLSSKSISPSKKPRL
TMPNKMQTGSKRREDSDEEDAKTDAESSAVKEAVMAEPEKVPENTEESTTLKTFSARKIS
LSSSKPSPGAGSSEGEAEAAPGTATVSGRKRRWGSSTTVTAKKPSISITTDSLKSLIPDI
RSGLTQEAVLDLHPEETPLSEEEDGGDAGDQDLKIRRTVTQVVPETQENGQKELKLSERE
EDPEEAVEELSSQKSRLEATMETEPSLPTQHVEMKTVTTSEPLFRRSISQQKSGVSITID
DPVRATKQPSPPRGKISNIVHVCNLVRPFTLGQLKELLSRTGTIVEEDFWIDKIKSHCYV
SYSSLEEAQATRAALHGVKWPQSNPKFLSVDFCQKEELDFHRGLLIGERPAEEERGAAAG
PGLRPAGPPLPPHPERELWAEREREMERRERARTEREWDRDKVRDFGKPGEEGANRRSRS
RDRERKRKERGKSKEKKTDKKEKGPEEPPAKLLDDLFCKTKTAPCIYWLPLTEEQAAQRE
AARAERMREREKRRKELQLEEDKKREEERKERLKSGGGEGERERDRERERGREREGDKRR
DGYRRPGAGVAGGSRRSRSRSDPPPRDKRR
NT seq
6033 nt
NT seq
+upstream
nt +downstream
nt
atggcggacctggaagacgttacgctggacgggaggccgctccaatccctccgagtggcg
gacctgaaggcggccctggaggagagagggctctcgaagagcgggcagaaaaatgcgctc
gtcaagcggctcaaaggggctctcatgctggaaaacctccagaagacttccacccatcat
actggtctgcagccaaactcccagattggggaggagatgagtcagaacagctttattaaa
cagtaccttgcaaagcaacaggagcttcttaggcagcgtttggagagagaggcacgtgag
gcaattgaaactgatgaccatgaagaccatggcgagactaacgataacaacatttgttct
gcatcaaatgaggatactgccgctgaagtaattgaccaaaataaacctgctgccccagtg
ggtgagggatttgtcgctacaaggcgtggaaatgctcacagggaaagagacattcctata
catccatcgccctctgcacctcgccaaccagatgcagaatcgccttcgtctgtcagagtc
aggcgtggaagggatttcaagtccgcttcaagtcatgtacctgttgatagtgatgaggat
aatgaagctggagaggataacgatgaggaagaagagtggaatatggctgctcagcagagt
aaaagagcaaagatgcccaaaacccgaccagttagggagaggtctgggagttcacgtcag
ccacagcccccaccacacagacccttactgtctcaaccgctcagacagcccacacctcct
ccttcgccgcctcctgaactttcattccctcttccagacacccctaaacagagtccacct
agtccagaactctcgcctagacagcaaacatctagcacatcaggctctgagagctctagt
agcagtagtcgtagcagcagccctgaacctggaagcgatcatactgaacgcaagccaggc
ccactcagcctgcttgctcagaagatggagtcagagggagctttctctggagcaggccga
ggtggacgtgtggaggacgaagcgggtgctgacgttctctctgcatttgcaggcaaaggc
cacccaggaactgtatctgcaattacccacacggcaaatgcaacacaacgcaagcgttct
ttgaaacgtgatagactggcgagagaagaagctatggagcgggaagaaagtgaaagagtt
ttgcaacgagaaagggaagaaaacgagaaagctttagagcgagagagacttgagagacag
ctagctttagagcaagagaaattggaaaaagaactggagagagaacaagctctggagaga
gagagacttgaaaaggagcgtcttgagagggagaggctagagaaggagaggctagaaaag
gagcgcttgaagagggagaggttagagaaggagaggctggagaaggagcgcttggagagg
gaaagacaggaaaaagagaggctggagaaggagcgcatggagagggaacgccttgagaag
gagaggctagagaaggagagactggagaaagagcgccttgagagggaaaggctggagaaa
gagcgccttgagagggagaagctggagagggagcgccttgagaaggaaaggctagaaaaa
gaacacctggagagggagaggctggagaaggagcgtttggagagggaacgccttgagaag
gagagattagaaaaggaacgccttgagaaggagaggttagaaaaggaacgccttgagaag
gagaggttagaaaaggaacgccttgagaaggagaggttagaaaaggaacgccttgagaag
gagaggttagaaaaggaacgccttgagaaggagaggttagaaaaggagcgcctggagaag
gagaggctggagagggagcgtcttgagaaggaaaagttggaaaaggagcgctttgagaag
gagaggttagaaaaggaacgccttgagaaagagaggctggagagggagcgccttgagaaa
gagaggctggagaagcagcgccttgagaaagagaggctggagaaggagcgccttgagaaa
gagagactggagaaagagcgccttgaaaaggagcgcctggagaaggagcgccttgagcag
gagaggctggagaaagagcgccttgagcaggagaggctggagaaagagcgccttgagcag
gagaggctggaaagagagcgccttgagcaggagaggctggagaaagagcgcctggagaag
gagaacctggagaaagagcgcctggagaaggagaggctggagaaagagcgcctggagaag
gagaggctggagaaagagcgcctggagaaggagaagctggagaaagagcgcctggagaag
gagaagctggagaaagagcgccttgagcaggagaggctggaaaaagagcgccttgagcag
gagaggctggagaaagagcgccttgagcaggagaggctggagaaagagcgccttgagcag
gagaggctggagaaagagcgccttgagcaggagaggctggagaaagagcgccttgagcag
gagaggctggaaaaagagcgccttgagcaggagaggctggagaaagagcgcctggagaag
gagaagctggagaaagagcgcctggagaaggagaagctggagaaagagcgcctggagaag
gagaagctggagaaagagcgcctggagaaggagaagctggagaaagagcgccttgagcag
gagcagctggagaaagtgcgccttgagcaggaaaggctagagagagagcgccttgagcag
gggaggctggagaaggagcgactggagaaagaacaagctttgaagaaggagcggctggag
aaagaacaggctttggagaaggagcgactggagaaagaacaagctttggagaaggaacag
ctagagaaagagaggctagagagagagcaggccttggagaaggagacgctggtgaacgaa
ttagctctggagaaggagaggttggagagagaacaagctcaagagatggcacggctggag
aaagaaagattggagcaaaatgaaagagaagaagctctggaaaaggaacgattgaagaaa
gaagaggctttggagaaggagaggcaggagaaagaacgattggagcgagaagaagctttg
aaaaaggagaggcaagaaaaggaacggttggaaagggaagaagctctggagaaggaaagg
ttggagagagaaaaagctctggagaaggaacgattggaaagagaagaagctctggagaag
aagaggctagaaaagcagcggttggagcgagaagaagctctggagaaggaacgattggcg
agagaagcagcactggagaaggaacgattagagagagaagaagctttggagaaggagagg
ctggagaaggaacgattggagagagaagaagccttggaaaaggagaggctggagaaggag
cgattggcgagagaagaagctttggagaaggaacggttagctctggagaaggaacgattg
gcaagagaagaagctttaaagaaggagaggctggagaaggaacggttggagagagaagaa
gctcttgagaaggaacggttggagagagaagaagctctgaagaatgagaaggagcgagtg
gaacaaatgcaagcttttgaaaaggacagactgaagagagaagctttggagaatgagaga
gtagatagagtacaacctttggagaaggcgcaatctccccaatcctcctcaaagaaattg
cacatttttaaagatcctgtgaaagatgtttccttaccacaaccactctctacttgtcct
acaaggcctaacaatcaagatggcaattcaacagaggctgatgtatctttgcagacaaag
tctcctaaagatgaaaatgataggggtttagtacctaaagcctcccttttaacatcctcc
cacaagacaggttcacaaaatgaatcgcacaaacaggttgatcatgaggtgccaaaagat
gaaaataatgtacagaaaacatcctcagactcccattcctcaccagaacagcaagagagg
gaagagaagaagaagagagtaagaaaggactcctcctccagtgactcttcatctgactcg
gactctgaatcttcatcttcgtcaagttcatccggttcttcttcttcctcgcaggataaa
tgctccacaatagatgatctgaggtcagaaaaagccaaaggaatcaagggaaaggaaagc
caagagaaagaaatcatggatcagcacaaggacgttgcaccaaaacacagaaaatatagc
ttcacagaggaacaggacttaagcagcaagagcatcagcccaagcaagaagcctcgcctc
acaatgccgaataaaatgcagacaggaagcaagagacgagaagactctgatgaggaggat
gctaaaacagatgctgaaagtagtgctgtgaaggaggcagtaatggcagagcctgagaag
gttccagagaatactgaggagagcaccaccctgaagactttttctgcccgcaagatctct
ctcagcagcagcaagccatcacctggtgccgggagctcagagggagaggctgaggctgca
cctggtactgccacggtatcaggcaggaagagaagatggggctcgagcactacggtcact
gccaagaagccctccatcagcatcaccaccgactctctaaaatccttgattccagatatc
cggtcaggcttgactcaggaagcagttctggatctgcacccagaggagacgcccctctct
gaagaagaggatggaggagatgcaggagaccaggacctgaaaatcagacgaactgttaca
caggttgtacctgagactcaggagaatggccagaaagaactgaaactctctgagcgtgag
gaggatcctgaggaagcagtagaggagctctcctcccagaagagcagactggaggctacc
atggagactgagccgtccttacctacacaacatgttgaaatgaagactgtaactaccagc
gagccgctgtttcgccgctccatcagccagcagaagtctggcgtgagcatcaccattgat
gaccccgtccgtgctactaagcagccttctcctcctcgtggcaaaatctccaacatagtt
cacgtctgcaatctggtcaggccgttcaccctgggacagctgaaggagctgctgagccgc
actggcaccatagtagaagaggacttctggatcgacaagataaaatctcactgctatgtc
tcgtactccagtctggaagaggcacaggcaactcgtgcagctctgcatggggtgaaatgg
ccccagagcaatccaaagttcctcagtgtagacttctgccaaaaggaggagctggacttc
cacagaggtctgctgataggagagcggccggcagaggaggagagaggagctgcagctggg
cccggcctccgtcctgctggccccccactacctccccacccagagcgagaactgtgggct
gagcgcgagcgagagatggagaggagggagagagcgcgtactgagcgggaatgggatcga
gacaaggtccgagatttcggaaaacccggagaagagggggcgaacaggcggtcccggtcc
agagaccgagagcggaagcgcaaggagagaggaaagagtaaagaaaagaagacagacaag
aaggagaaaggaccagaagagccacctgcaaaactgttagatgaccttttctgcaaaacc
aaaacagccccttgtatttactggctccctctcactgaagaacaggcggctcagagggaa
gcggcgcgtgcggagcggatgagggagcgagagaagagaaggaaggagctccagctggag
gaggacaagaagcgagaggaggagcgtaaagaaaggttaaagagtggtggaggggagggt
gagagagagcgggacagggaaagagagcggggcagggagcgggagggagacaagcggaga
gacgggtaccgccggccaggtgcaggcgtcgctggtgggagccgtaggtcccgcagtcgc
agcgaccccccgcctagagacaagcggcgctga
DBGET
integrated database retrieval system
