Astyanax mexicanus (Mexican tetra): 103041587
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Entry
103041587 CDS
T05042
Symbol
thoc1
Name
(RefSeq) THO complex subunit 1
KO
K12878
THO complex subunit 1
Organism
amex
Astyanax mexicanus (Mexican tetra)
Pathway
amex03013
Nucleocytoplasmic transport
amex03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
amex00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
103041587 (thoc1)
09122 Translation
03013 Nucleocytoplasmic transport
103041587 (thoc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
amex03019
]
103041587 (thoc1)
03041 Spliceosome [BR:
amex03041
]
103041587 (thoc1)
Messenger RNA biogenesis [BR:
amex03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
103041587 (thoc1)
Spliceosome [BR:
amex03041
]
Complex C
Other components
EJC/TREX
103041587 (thoc1)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
103041587 (thoc1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
efThoc1
Death
Motif
Other DBs
NCBI-GeneID:
103041587
NCBI-ProteinID:
XP_022521246
Ensembl:
ENSAMXG00000014708
LinkDB
All DBs
Position
8
Genome browser
AA seq
655 aa
AA seq
DB search
MSPGVFNLLEAREKLTAGTGSALGARSCKPLTSAFSHLSGTEAEKKNTLDQVLRGVLEEQ
IVKHGNVDENLSLIYISISAVTEGICSATTPFLLLGDVLDCLPLDQCDKIFSFVEENVST
WKSNSFYSAGKNYLLRMCNDLLRRLSKSQNTVFCGRIQLFLARLFPLSEKSGLNLQSQFN
LDNITVFNKNEQESTLGQQSSEVKEDGMEVEEGEMGDEDAPAPCSIPIDYNLYRKFWTLQ
DYFRNPVQCYDKFSWMTFVKFSDETLAVFKSYKLDDTQASKRKLEEMRTAGGEHVYFAKF
LTSEKLMDLQLSDSNFRRHILLQYLILFQYLRGQVKFKSSNCVLNDDQTAWMEDTTKLVY
QLLRETPPDGDKFAGMVEHILNTEENWNSWKNEGCPSFVKERPAETKPTRPSSRKRAAPE
DFLGKGPERKILMGNEELTRLWNLNPDNMEACKSDSREFMPSLEDFFEEAIEQADPANMV
EDEYKVVRNSNYGWRALRLLSRRSPHFFQPTNQQFKSLDEYLENMVIKLAKELPKDLPSE
EIKTGEEEDENGVSLLKTGSDSLQAGLQNKPVTNSQMDEIAGKLGDGWRLLADQMEMKAS
EVREIESDSEDVDLQAKMLLVAWQDREGNQATMESLITALNAAGFTAIADSLSDA
NT seq
1968 nt
NT seq
+upstream
nt +downstream
nt
atgtctcccggcgtgtttaacctgctggaagcgcgggagaaactcacggcgggtacagga
agtgctctgggagctcggagctgtaaacccctcaccagcgccttcagtcacctgtctgga
actgaggcggagaagaagaacacgttggatcaggttctgcggggagttctggaggagcag
atcgtgaaacatgggaacgttgatgagaacctgtctctgatctacatcagcatcagtgct
gttactgaaggtatctgttcagccaccactccgttcctgctgctgggggatgttctggac
tgtctcccgctggatcaatgtgataaaatcttctccttcgtggaggagaatgtttccacg
tggaaatctaattccttctactctgctgggaagaactatctgttgaggatgtgtaacgat
ctgctcagacgactctctaaatcccagaatacagtgttctgtgggcggatccagctcttc
ctcgcccgcctcttccctctgtctgaaaaatcaggtctgaatctgcagtctcagtttaat
ctggataatatcaccgtgtttaataagaatgagcaggagagcactctggggcagcagagc
tcggaggtgaaggaggatgggatggaggtggaggagggagagatgggggatgaagatgct
cctgctccgtgttctattcctatagattataacctgtacaggaagttctggacgctgcag
gattattttaggaacccggtgcagtgttatgataagttctcctggatgaccttcgttaag
ttctctgacgaaactctggccgtgtttaagagctataagctggacgacactcaggcctct
aagaggaagctggaggagatgaggacggccggaggagagcacgtctacttcgccaagttc
ctcaccagcgagaagctgatggatcttcagctgagtgacagtaacttcagacggcacatc
ctcctgcagtacctcatcctcttccagtacctcagaggacaggtcaagttcaagagctca
aactgtgtgctgaatgatgatcagacagcctggatggaggacactactaaactagtctat
cagttgctgagagaaactcctccggatggtgataagtttgctgggatggttgagcacatc
ctgaacacggaggagaactggaactcctggaagaacgagggatgccccagcttcgttaag
gagaggcctgctgaaaccaagcccactcgccccagcagcagaaagagagcagcgccggag
gatttcctgggaaaaggtcctgagagaaagatcctgatgggaaatgaggaattgacgaga
ctgtggaatcttaacccagacaacatggaggcctgcaaatcagacagcagagagttcatg
ccgtctctggaggacttttttgaggaagccattgaacaggccgatccagccaacatggtg
gaggacgagtacaaggtggtgaggaactctaattacgggtggagggctctccgcctcctc
tcgcgccgcagccctcacttcttccagcccaccaatcagcagttcaagagcctggacgag
tacctggagaacatggtcatcaaactggctaaagagctgcctaaggatctcccatctgaa
gagataaagaccggagaggaggaggacgagaacggagtcagtctgctgaaaaccggcagc
gacagtctgcaggcgggtctgcagaataagccggtgacgaacagtcagatggatgagatc
gcagggaagctgggtgatgggtggcgtttgctggcggatcagatggagatgaaagcgtcg
gaggttcgggagatcgagtcggacagcgaggacgtggacctgcaggccaagatgctgctg
gtggcctggcaggaccgcgaggggaaccaggccaccatggagagcctgatcaccgcgctg
aacgccgccggcttcaccgccatcgccgacagcctcagcgacgcgtaa
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integrated database retrieval system
