Astyanax mexicanus (Mexican tetra): 103041605
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Entry
103041605 CDS
T05042
Symbol
cpsf6
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 6 isoform X4
KO
K14398
cleavage and polyadenylation specificity factor subunit 6/7
Organism
amex
Astyanax mexicanus (Mexican tetra)
Pathway
amex03015
mRNA surveillance pathway
amex03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
amex00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
103041605 (cpsf6)
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
103041605 (cpsf6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
amex03019
]
103041605 (cpsf6)
Messenger RNA biogenesis [BR:
amex03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor Im (CFIm)
103041605 (cpsf6)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RSLD_CPSF6
RRM_1
PRP38_assoc
Motif
Other DBs
NCBI-GeneID:
103041605
NCBI-ProteinID:
XP_022530013
Ensembl:
ENSAMXG00000016745
LinkDB
All DBs
Position
2:complement(26246474..26265012)
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AA seq
544 aa
AA seq
DB search
MADGVDHIDIYADVEEEFTQEADYPVHEQIDLYDDVISPSANNGDAPEDRDYLDNLPAPG
GSEGSKGPPSNIVFTYTGKRIALYIGNLTWWTTDEDLTEAIRSIGINDVLEIKFFENRAN
GQSKGFALVCVGSDSSSRKLLDLLSKRELHGQNPIVTPCNKQSLSQFEMQSRKSTQSGQM
SGEGKAGPPGVGPRGAFPLSRGRGRFPGPSGPGGDRFPGPVGPGAPPPHFPGSMQGPPRP
PPGPPGPPGPPGPPPPGQGLPPPLSGPPNRGDRPPPPVMFPGQFGQPPMGPMPPGPPPPG
YGPPPGPPPPQQGPPPPGPFPPRPPGPIGPPLALAPPHLRGPPPGGPPPAPHVNPAFFPP
PGNNNMPSSDRGPPPNDPYGRPPPYDRDYGPGRDMDAPRVPLSEAEFEEIMNRNRAISSS
AISRAVSDASAADYGSAIETLVTAISLIKQSKVSADDRCKVLISSLQDCLHGIESKSYGS
ASRRERSRERDHSRSREKSRRHKSRSRDRHEDYYRERSRERDRHRERDRDRERDRDRERE
YRHR
NT seq
1635 nt
NT seq
+upstream
nt +downstream
nt
atggcggacggtgtggatcatatagatatctacgcggatgtggaggaagagtttacacag
gaagcagattaccccgttcatgaacagatagacctgtatgatgacgtcatctcgccatcg
gccaataacggagatgctcctgaggaccgagattacctggacaacctgccggccccaggg
ggctctgagggaagcaaagggcccccatctaacatagtgttcacatacacgggcaaacgc
atcgctctgtacattggaaaccttacttggtggaccacagatgaagatctgactgaggcc
atccgctccatcggtattaacgacgtgctggagatcaagttctttgagaatcgagctaac
ggccagtctaaaggatttgcgctggtgtgtgtgggctctgactcctcctccaggaagctt
ttggacctgctgtcgaagcgcgagctgcatgggcagaaccccatagttaccccctgcaac
aagcagtcactcagccagttcgagatgcagtcacgaaagagtacccagtccggacagatg
tcaggagagggtaaggccggacccccaggtgtggggccccgcggtgccttccctttgagc
aggggtcgaggacgctttccggggccatctgggcccggaggggaccgctttcctggacct
gtcggacccggggcgcccccgccacacttcccagggagtatgcaagggccacctcgtcct
cctcccggacccccaggtcccccgggccccccaggaccgcctcccccagggcagggtctc
cccccacccctctccggccccccaaacagaggcgaccgcccccctccccctgtcatgttc
cctggtcagtttggtcagcctcctatgggccccatgcctcctggccctccaccaccaggc
tatgggccaccccctggcccacctccaccacagcaaggcccaccccctcctggcccattc
cctcctcgtccccctggtcctattggtccacctctggctttggccccacctcacttgcgt
ggccctcctcctggaggtccgcccccagccccccatgtcaaccctgccttcttccctcca
cctggaaacaacaacatgccctcgtcagacagaggtcctccaccaaacgacccgtacgga
cgcccgcctccatatgaccgagattacggccctggcagggatatggatgcccctcgggtt
cctctgagtgaggcggagtttgaggagataatgaatcggaacagagcgatttctagcagc
gccatatctcgggctgtttcagatgcgagtgcagcggattacggcagcgctatcgagact
ctggtgacggccatctcgctaattaaacagtcgaaagtgtcagctgatgaccgctgcaaa
gttctaatcagctccctacaggactgcctacacggcatcgagtccaaatcctacggctct
gcctccaggcgagagcgttcccgggaacgagaccacagtcgttctcgtgagaaaagccgg
cgccacaagtcccgcagccgtgaccgccatgaggactactaccgcgagcgcagccgagag
cgtgaccgccaccgcgagagggaccgggaccgcgagcgagaccgggacagagagagggaa
taccgccaccgctag
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