Astyanax mexicanus (Mexican tetra): 103041720
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Entry
103041720 CDS
T05042
Symbol
ddx46
Name
(RefSeq) probable ATP-dependent RNA helicase DDX46
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
amex
Astyanax mexicanus (Mexican tetra)
Pathway
amex03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
amex00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
103041720 (ddx46)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
amex03041
]
103041720 (ddx46)
Enzymes [BR:
amex01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
103041720 (ddx46)
Spliceosome [BR:
amex03041
]
Complex A
U2 snRNP components
U2 related factors
103041720 (ddx46)
Complex B
103041720 (ddx46)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
KH_12
KH-I_KHDC4-BBP
CdAMP_rec
Motif
Other DBs
NCBI-GeneID:
103041720
NCBI-ProteinID:
XP_007238959
Ensembl:
ENSAMXG00000008413
UniProt:
A0A8B9KLK0
A0A3B1IBY8
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All DBs
Position
17:complement(33482909..33507786)
Genome browser
AA seq
1051 aa
AA seq
DB search
MGRESRHYRKRSSSRGRSGSRSKSRSPDSKRSKRDEPAGSRTRERSRRDRSRSRERRRSR
SRDRKRQRRSRSRERKRSRSRERRRSRSRSKGRRSRSSSPSKSRKNDEGKERSDNGEQLV
DKKKIKEEKEEEKPEDQDFDQNTLEEEMRKRKERVEKWREEQRKKAMENIGEIKKELEEM
KQGKKWSLEDDDDDDEEGPSSVDREEEEEEKEKEGKSEESAAMETETGEELDPLDAYMEE
VKEEVKKFNMGTMRGNDKKGGMTVTKVVTVVKTKKTPHTTKKKGELMENDQDAMEYSSEE
EEVDLQTALTGYQTKQRKILEPVDHQKIQYESYRKNFYVEVPELARMTPEEVNEYRLELE
GITVKGKGCPKPIKTWVQCGTSMKVLNALKKHNYEKPTPIQSQAIPAIMSGRDLIGIAKT
GSGKTIAFLLPMFRHILDQRPLEEGEGPIAVIMTPTRELALQITKECKKFSKPLGLRVVC
VYGGTGISEQIAELKRGAEIIVCTPGRMIDMLGANSGRVTNLRRVTYVVVDEADRMFDMG
FEPQVMRIMDNVRPDRQTVMFSATFPRAMEALARRILNKPVEVQVGGRSVVCSDVEQHVI
VIEEDKKFLKLLEILGHYQEKGSVIIFVDKQEHADGLLKDLMKASYPCMSLHGGIDQYDR
DSIINDFKNGACRLMVATSVAARGLDVKQLILVVNYNCPNHYEDYVHRAGRTGRAGNKGF
AYTFITDEQARYAGDIIKALELSGSAVPSELEQLWATFKEQQKAEGKIIKSSSGFSGKGF
KFDETEHALANERKKLQKAALGLHDSDDEDTALDIDEQIESMFNSKKRVKDLTAPGSSAG
VAAPGFTGATAATGLTGLAAPSAGNIQKLEIAKKLALKINAQKNLGAEAQDVMQQATNAI
MRGGTIIAPSVSAKTIAEQLAEKINAKLNYTPVEKLEEERQAAEQAESIKRYEEELEIND
FPQTARWKVTSKEALQRIGEYSEAAITIRGTYFPPGKEPKEGERKIYLAIESANELAVQK
AKAEITRLIKEELIRLQNSYQPTSKGRYKVL
NT seq
3156 nt
NT seq
+upstream
nt +downstream
nt
atgggccgcgagtcgaggcactacaggaaacgctcctcatccaggggaaggtccggtagc
cggtctaagagccgctctcctgattctaagcggtcaaagagagatgagccagctggctcc
cgcacccgtgagagaagcaggagggatcgttcaagaagcagagaacgccggaggtcacgc
tccagagataggaaacgccagaggcgctcaaggagtcgagagcgaaagcggtccaggagc
agagagcgccggaggtccaggagtagaagcaaaggaagaaggtcgagatcttccagccct
agcaagagtagaaaaaatgacgagggtaaggagagatcagacaatggagagcaactcgta
gacaagaagaagataaaagaggagaaggaggaggaaaagcctgaagaccaagacttcgac
cagaacacactagaggaggagatgaggaagagaaaggaacgagtggagaaatggagggag
gagcagaggaaaaaggccatggagaacattggggagatcaagaaggaacttgaggagatg
aaacagggcaagaagtggagtctggaagacgatgatgatgatgacgaggaaggtccatcc
tcggtggaccgtgaagaagaagaggaagagaaggagaaagaaggaaagtctgaggagagt
gcagcaatggagacagaaaccggagaggagctggaccctttggatgcatatatggaggaa
gtgaaagaggaggtgaagaagttcaacatgggaaccatgagaggaaatgataagaaaggt
ggaatgactgtgactaaagttgtgactgtagtcaaaacgaagaagactcctcataccacc
aagaaaaagggagagctcatggagaatgatcaggatgccatggagtattcatctgaagag
gaggaggtggacctgcagaccgcccttaccggctatcagacaaagcagaggaagattctc
gagcctgtggatcatcaaaagatccagtatgagtcgtaccgcaagaacttctatgtggaa
gttcctgaactggccagaatgactccggaggaggtgaacgagtaccgcctggagctggag
ggcatcaccgtgaagggaaagggctgccccaaacctatcaagacctgggtacagtgtggg
acgtccatgaaagtcttaaacgcccttaaaaaacacaactatgaaaagcccacacccatc
caatcccaggcaatccctgccatcatgtctggacgggatctcatcggaatcgccaagacc
ggaagtgggaagaccatcgccttcctgctgcccatgttccgccatatattagaccaacgg
ccactggaggaaggagaaggacccattgcggtgatcatgaccccgacccgagagctggct
ctgcagatcactaaggagtgtaagaagttctccaagccgctgggattgcgggtggtgtgt
gtgtatggaggcactgggatcagtgagcagattgctgagctgaagcgaggagcagagatc
atcgtctgcacaccaggtcgaatgattgacatgttgggtgccaacagtggccgggtcaca
aacctgcggagggtgacgtacgtggtggtggatgaagctgaccggatgttcgatatgggc
tttgagccgcaggtgatgcgtataatggataacgtgaggccggatcgtcagacggtgatg
ttctctgccactttcccacgagcaatggaggctctggcccgcaggatcctgaacaagccg
gtggaggtgcaggtcggggggagaagcgtggtctgctcagatgtggagcagcatgtgatt
gtgattgaggaagacaagaagttcctgaagctcctggagattcttggtcattaccaggag
aaggggtcggtcatcatctttgtagataaacaggagcatgctgatggtctgctgaaggac
ctgatgaaggcttcctatccctgcatgtctcttcatggaggaattgatcagtacgacagg
gacagcattattaacgactttaaaaacggggcctgtagactgatggtggccacttcggtg
gcagccagagggttggatgtgaagcagctgatccttgtggtgaactacaactgcccgaac
cactacgaagactatgttcatcgggccggccgcacaggcagagcgggaaataaaggcttc
gcctacacgttcatcaccgacgagcaggcacgctacgctggtgacatcatcaaagctctg
gagctgtcgggttcagccgttccttctgagctggaacagctgtgggccacctttaaagaa
cagcagaaagctgagggcaaaatcatcaaaagcagcagcggcttctctgggaaagggttc
aagtttgacgagactgagcacgctctggctaacgagaggaaaaagctgcagaaagctgca
cttggtcttcatgactctgatgatgaggacacagcactggatattgacgagcagattgag
agcatgtttaactctaagaagcgggtgaaggacctgacggcgccgggcagcagtgctgga
gtggctgctcccgggttcactggagccactgcggccacaggtctcactggtctggcagct
ccttcagctggaaacatccagaaactggaaatcgccaagaagctggccctgaagatcaac
gcccagaagaacctgggtgcagaggcacaggatgtgatgcagcaggctaccaatgccatc
atgaggggcggcaccattattgccccatccgtttctgccaaaaccatcgctgagcagctg
gctgagaagatcaatgctaagctgaactacacgcccgtggagaagctggaggaggagagg
caggctgccgagcaggctgagagcatcaagagatacgaggaggagctggagatcaatgac
ttccctcagacggccaggtggaaggtcacatctaaggaggctctgcagagaatcggagag
tactctgaagctgccatcaccatcagaggcacatacttccctcccggaaaagaacccaaa
gagggagaacgcaagatctatcttgctattgagagtgctaatgaactggcagtgcagaag
gcaaaagctgaaatcactaggctcatcaaagaagagctcatccgtctgcaaaactcgtac
cagccaaccagcaaaggaagatacaaggttctgtag
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integrated database retrieval system
