Astyanax mexicanus (Mexican tetra): 103041723
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Entry
103041723 CDS
T05042
Symbol
taf5l
Name
(RefSeq) TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
amex
Astyanax mexicanus (Mexican tetra)
Pathway
amex03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
amex00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
103041723 (taf5l)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
amex03021
]
103041723 (taf5l)
03036 Chromosome and associated proteins [BR:
amex03036
]
103041723 (taf5l)
Transcription machinery [BR:
amex03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
103041723 (taf5l)
Coactivators
SAGA/TFTC/STAGA complex
103041723 (taf5l)
Chromosome and associated proteins [BR:
amex03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
103041723 (taf5l)
STAGA complex
103041723 (taf5l)
TFTC complex
103041723 (taf5l)
SAGA complex
103041723 (taf5l)
SLIK complex
103041723 (taf5l)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_WDHD1_1st
Beta-prop_CAF1B_HIR1
WD40_CDC20-Fz
Beta-prop_EML_2
EIF3I
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_2nd
TFIID_NTD2
Beta-prop_WDR90_POC16_2nd
WDR55
Beta-prop_TEP1_C
Beta-prop_EML
WD40_MABP1-WDR62_1st
Beta-prop_WDR75_1st
Beta-prop_SCAP
ANAPC4_WD40
Beta-prop_IFT122_1st
WDR90_beta-prop_4th
Beta-prop_RIG_2nd
NBCH_WD40
Beta-prop_IFT140_1st
RMC1_N
Beta-prop_DCAF4
Beta-prop_HPS5
Beta-prop_EIPR1
Beta-prop_SPT8
Beta-prop_Vps41
WD40_like
Beta-prop_WDR19_1st
PEP5_VPS11_N
Beta-prop_IP5PC_F
Nbas_N
WDR54
WD_LRWD1
Motif
Other DBs
NCBI-GeneID:
103041723
NCBI-ProteinID:
XP_007260677
Ensembl:
ENSAMXG00000038854
UniProt:
A0A8B9K3A7
LinkDB
All DBs
Position
21:33436297..33447581
Genome browser
AA seq
603 aa
AA seq
DB search
MKRGRTEQIQYTVTQYLKRRQYVDTDGSLKGAKLSQSAEEMAASLTVQTESSCANVVSAA
PCQSDPQQYDAQFSKLRTFLLEAEVPWASEVSVVLFPLFLYLHLDMARCGLKGAVDSFYS
RFHSLFQQDVEQKAIVELLRGVLTNQDVVSNSKLCALLDHKYVVHLTDQAYSYLLRYLQS
DDNSAICRVLSTHLQVEVTAVRRTDYQLYGAGLNTGNSTSTSSSTWSGVDGAEGAEPVEV
TAGLPQNEAALDALQDCIKRVREGPPSLTTVCFYAFQHTEQLLNTAEVSPDSRLLAAGFD
NSAVKLWSLRARKLKAGPHKADVAKIRLACDVLEEEADEEDASGSEIKTLRGHCGPVYRT
AFLTDSSGLLSCSEDSTVRYWDLNSFTNVALYRGHAYPVWDVDVSPCSLYFCTASQDRTA
RLWTFQRTYPLRLYAGHLADVDCVKFHPNSNYIATGSTDKTVRLWSTQQGNSVRLFTGHR
GPVLSLAFSPNGKYLASAGEDQRVKLWDLASGTLFKDLRGHTDSVMSLSFSPDSALVASA
ALDNSVRVWDIRNAHSGAAAAADGSSGELVGLYTGETSSVLNVQFMACNLLLVTGTALEK
QEQ
NT seq
1812 nt
NT seq
+upstream
nt +downstream
nt
atgaagcggggccggactgagcagatccagtacacggtgacgcagtacctgaagaggcgt
caatatgtggacacggacggctcactgaaaggagcaaagctctctcagtccgctgaggaa
atggcagccagtctcacagtccagacagagtccagctgtgcgaatgtggtctctgcagca
ccgtgccagtcggaccctcagcagtacgatgctcagttctctaaattacggacctttctg
ctcgaggcggaggtgccgtgggcgagcgaggtgagcgtagtgctgtttcctctcttcctc
tacctgcacctggacatggcgcgctgtggcctgaagggggcagtagattccttctacagc
cgtttccactccctcttccagcaggatgtagagcagaaagccattgttgagcttctgcgt
ggagttctaacaaatcaggacgtggtctccaattctaaactctgcgctctgctggaccac
aagtacgtggttcacctgacggaccaggcctacagttacctgctgcggtatctacagagt
gatgacaacagcgccatctgcagggtgctcagcactcacctacaggtcgaggtgacggct
gtgcgccgaaccgactaccagctctacggggcggggcttaacaccggaaactccacctcc
acttcctccagcacctggtcaggtgtggatggagcagagggggcggagcctgtggaggtc
acggcggggctccctcagaacgaggccgctctggacgctcttcaggactgcattaagcga
gtgagggaaggccccccgtcgttaaccaccgtgtgtttctacgccttccagcacacggag
cagctcctgaacacggccgaggtctcgccagacagtcggctgctcgccgccggcttcgac
aactccgccgttaaactgtggagcctgcgggccaggaagctgaaagcaggaccacacaaa
gccgacgtggccaaaatccgcctggcctgtgacgtgctggaggaggaggcggacgaggag
gacgcctcaggtagtgagataaagacccttcgtggacattgtggccccgtgtaccgcacc
gccttcctgacggacagctccggcctgctgtcctgctccgaggactccacggtgcggtac
tgggacctgaacagcttcacgaatgtggcgctttaccgcggccacgcctaccccgtgtgg
gacgtggacgtgagcccctgcagcctgtacttctgcacggcgtcgcaggaccgcacggcc
cggctctggaccttccagcgcacgtacccactgcgcctttacgccgggcacctggcggac
gtggactgcgtgaaattccaccccaactctaactacatcgccacggggtccacggacaag
acggtgaggctgtggagcactcagcagggcaactccgtcaggttattcaccggacaccga
ggcccggttctgtccctagcgttttctccaaacgggaagtacctggcctcggccggagag
gaccagagggtgaaactgtgggatctggcatccgggactctgtttaaagacctgcgggga
cacacagacagcgtgatgagtctgtccttcagtccggacagcgccctggtggcctcggct
gccctggacaactctgtgcgggtgtgggacatccggaacgctcacagcggggcggcggct
gcggcggacgggtctagcggagaactggtgggattatatacgggagaaactagcagcgta
cttaacgtccagtttatggcgtgtaacctgctgctggtaactggtacagcactggagaaa
caagagcaatga
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integrated database retrieval system
