Astyanax mexicanus (Mexican tetra): 103042018
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Entry
103042018 CDS
T05042
Symbol
ddx52
Name
(RefSeq) probable ATP-dependent RNA helicase DDX52
KO
K14779
ATP-dependent RNA helicase DDX52/ROK1 [EC:
5.6.2.7
]
Organism
amex
Astyanax mexicanus (Mexican tetra)
Brite
KEGG Orthology (KO) [BR:
amex00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
amex03009
]
103042018 (ddx52)
Enzymes [BR:
amex01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
103042018 (ddx52)
Ribosome biogenesis [BR:
amex03009
]
Eukaryotic type
90S particles
Helicases
103042018 (ddx52)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
SecA_DEAD
CagA
AAA_19
Potyvirid-P3
Motif
Other DBs
NCBI-GeneID:
103042018
NCBI-ProteinID:
XP_049322509
Ensembl:
ENSAMXG00000024377
LinkDB
All DBs
Position
17:complement(12926998..12941321)
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AA seq
623 aa
AA seq
DB search
MDAVDLFKRLGAGAKFNFKRFGKDADRFKVGRSQNKEASKSLDEINFFGIKPQKETTVHD
NNSEDEESENQQTTVTEKRKRSTADEPLNKSGKKRKGNKEETDDEENETDGDDERELEKE
GIRWTSSQDKKAKGPKKKAKDELSLKRLKQLHREKLNQIRHSNRINVHGTDIPDPLATFE
ELQKEYELDPRVIQNIKAAGFQTPTPIQMQAIPLMMHSREILACAPTGSGKTMAFCLPLL
AHLRQPMNKGFRALIVAPTRELASQTHRELLKLSEGLGFRVHMINKGVDAAKKYGPKSAK
KFDILVTTPNRLIYLLNQDPPAVDLSSVEWLVVDESDKLFEDGKTGFRDQLATIFLACSS
PKIRRALFSATFTTEVEQWCKLNLDNLVCVNIGPRNSAAETVEQELLFVGAENGKLLAMR
DLIKKGFMPPMLVFVQSIERARELFHELVYEGINVDVIHAERTQQQRDNVVNSFRSGNIW
VLICTALMARGIDFKGVNLVVNYDFPASAVEYIHRIGRTGRAGHKGKAVTFFTENDKPLL
RSIATVIKQAGCPVPDYMIGFKKLHSKERHRLEKKPPKRTTIRTTPLCLIKKKKKTDKGK
RKKGKNEATVQAGGDKSEKCTNN
NT seq
1872 nt
NT seq
+upstream
nt +downstream
nt
atggacgcggtggacctgtttaagcggctgggagccggagcgaagtttaattttaaacgc
tttggaaaagatgcggacaggtttaaggtagggaggtctcagaacaaggaggcttctaag
tctttggatgaaattaatttctttgggatcaagccccaaaaggagacgacagtacacgat
aacaacagtgaagatgaagagtcagaaaaccaacagactacagtcacagagaaacgaaaa
cgcagcaccgcggatgaaccattaaacaaatcagggaagaaaaggaaaggaaataaggaa
gaaacagatgatgaagagaatgagactgatggagatgacgagagagagctggagaaggaa
gggatccggtggacttcgtcccaagacaagaaggctaaagggcctaagaaaaaggcaaaa
gacgagctttcactgaaaagattaaaacagcttcaccgtgagaagctcaaccagatcaga
cacagtaacaggataaatgtacacggcacagatatcccagaccctcttgccacgtttgaa
gagcttcaaaaggagtatgagctggacccaagggtcattcagaacatcaaagcagcagga
ttccagacccccacacctattcagatgcaagccattccactcatgatgcatagtcgagag
attctggcgtgtgcccccactggctctggtaaaaccatggccttctgcttgcccctgctg
gcccatctccgccagccaatgaataagggcttcagagcccttatcgtagctcctactaga
gaattggccagccagacgcacagagagctgctgaaactgtcagaaggactgggtttcagg
gttcacatgatcaataaaggagtggacgcagccaaaaaatatggtcccaaatcagctaag
aagtttgatatactggtgaccactcctaacaggcttatttatctgctcaaccaggaccct
ccagctgtagatctcagcagtgtggaatggctggtggtggatgagtcggataagcttttt
gaggacggtaaaactggcttcagagatcagctggccactatcttcctggcctgctcctct
cctaagattcgacgagctcttttcagtgccacgttcaccacagaggttgagcagtggtgc
aagctcaatctggacaaccttgtctgtgttaacattggacccagaaactctgcagcagag
acagtagagcaggagcttctgtttgtaggagcagaaaatggcaagctgctcgccatgaga
gacctgattaaaaagggtttcatgccacccatgcttgtgtttgttcagtccattgagcgg
gcccgagagttgttccatgagttggtgtatgagggcattaatgttgacgttattcatgcc
gaacgcacacagcaacagagggataacgtggtcaacagttttcgctccgggaacatctgg
gtgctgatctgcacggcactaatggctcgaggtatcgacttcaaaggagtcaacttggtt
gtcaattatgactttcccgccagcgcagtggagtacatccatcggataggtcgcacagga
agagcaggccataaggggaaagccgttacatttttcaccgaaaatgacaaacctctgctg
cggagcattgccacagtaataaagcaagcaggatgccctgtgcctgattacatgattgga
ttcaagaagcttcacagcaaagagagacaccgtcttgagaagaaaccaccaaagagaaca
acaattcgcacaactcccctctgccttataaaaaagaaaaagaaaacagacaaggggaaa
aggaaaaaaggaaaaaatgaagcaactgttcaagcaggtggagacaaatcagaaaaatgt
acaaacaactga
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