Astyanax mexicanus (Mexican tetra): 103042055
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Entry
103042055 CDS
T05042
Symbol
ndc1
Name
(RefSeq) nucleoporin NDC1 isoform X1
KO
K14315
nucleoporin NDC1
Organism
amex
Astyanax mexicanus (Mexican tetra)
Pathway
amex03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
amex00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
103042055 (ndc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
amex03019
]
103042055 (ndc1)
Messenger RNA biogenesis [BR:
amex03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
103042055 (ndc1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ndc1_Nup
Motif
Other DBs
NCBI-GeneID:
103042055
NCBI-ProteinID:
XP_022525720
Ensembl:
ENSAMXG00000006212
UniProt:
A0A8T2L3W7
LinkDB
All DBs
Position
18:41556102..41577011
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AA seq
677 aa
AA seq
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MLSFNQDCWFVRKVVRWRALASIAWSVLLLPATTTLFVFLVRFSLFHPVEWISECFGLLT
AASTIFSLILLCGVVLVIGFFNLEGYTVVPSIPCSRVALLAKVLHPRQCVHSLVHCTVGM
MVMWCASVMAGGRYQALGSPCTRGESADAPEVCLNEYHLFLLLAGAFIGYSHSFLGVVQN
MNYVSFQIIQQYKYLRCKGSLPWVLKCSAVQSLYAVRNYVALYFFFGHIPRAWISNSLNL
PIDSSVHSLDSLTGLLDFSLLYHLWISGAFLLLTWYITVLLFRIYVTEAHRFPVQSTFAE
DAEQCLPKVLSEKRTLIMKFLALQDLALLSQHSPPRRQEVFSLSQPGGHPHNWNAISKEC
LALLSDLTQRLVAHHDAVASNGRARPPSATSDTRTTSNSSVSSAVVSGTEDLPQTPRPSV
LLKTPGSVFLKSSGRGISSPLTAPFTPDLDSPFSTPSLRHLAAQQVPQQGQWLGSVQSPH
IIRRGPKLWSTSTDSQANGSALASPVPTPSSPPPEQKSSFMAQWLQNRKEQVKGFMAKRV
LVVYLFNKLPEASSQALFADSQAHIWALEGLSHLVAASFSEDKYGVVQTTLPSILGCMLS
LQEAVDRHFKLPHASSKPVKTSCSMGDSTYKTLRFALRAALKTSIYRITSTFGEHLNAVC
ISAEHQKRLQQFMEYRE
NT seq
2034 nt
NT seq
+upstream
nt +downstream
nt
atgctgtccttcaatcaggactgttggttcgtgcggaaggtggtccggtggagagcttta
gccagtattgcgtggtcagtgctgctcctgccggccacgacaacgctatttgttttcctc
gttaggttcagtttgttccatcctgtggagtggatttcagaatgttttgggcttttgacg
gctgcgagcaccatcttctcgcttatcctgctgtgtggtgtcgtgctcgtgattgggttt
ttcaacctggagggttacacagtggttccctccatcccgtgctcccgagtggctctcctg
gctaaggtgctccacccgcggcagtgtgttcactctctggtgcactgcactgtgggtatg
atggtgatgtggtgtgcgtcggtgatggcgggaggccgttatcaggctctgggttctccc
tgcacgcgaggcgagagtgccgatgctcctgaggtttgtctgaatgagtatcatctcttc
ctgctgctggccggagcgttcatcggatacagccacagtttcctgggagtggttcagaat
atgaattatgtctcctttcagatcatacagcagtataagtacctgcgctgtaagggctct
ctgccgtgggtgctgaagtgcagtgcggttcagtctctctacgctgtgaggaattacgtc
gctctctatttcttttttggacatattcccagagcctggatctccaactcactgaatctg
cccatcgacagttctgttcactctctggactcgttgacgggtttgctggacttctctctg
ctgtatcatctgtggatcagtggagcattcctgctgctcacctggtacatcaccgtgctg
ctcttcaggatctacgttactgaggcacaccgattcccagttcagtccacgtttgcggag
gatgccgagcagtgtcttcctaaagtcctgagtgagaagaggactcttattatgaagttt
ctggcgctgcaggatctggccttgctgtcccagcactcaccgccccgcagacaggaggtg
ttcagcctgagccaaccaggtgggcaccctcacaactggaatgccatcagtaaggagtgc
ctggctctgctgagtgatttaacacagcgcctcgtagctcatcacgatgccgtcgcctcc
aacggcagagcaagacctccatcagccaccagcgacaccagaaccacctccaacagctca
gtttcctctgcagtggtctcgggtacagaggacctgcctcagaccccccgccccagtgtt
ttactaaagacccccggctcagtcttcctgaagtcgtccggcaggggtataagcagccct
ctgactgcccccttcaccccagacctggacagccccttctccaccccctccctgcgccac
ctggccgcccagcaggttccccagcagggccagtggttgggctcggttcagagcccacac
atcattaggaggggtcctaaactctggagcacatccacagactcgcaggccaatggcagt
gctctggcctcacctgtccccacccccagctctccgcctcctgaacagaaatccagcttc
atggcccagtggctccagaacaggaaggaacaggttaaggggttcatggcgaagagggtg
ctggtagtgtatttatttaataagctgccagaagcctcgagccaagccctgtttgcagac
agccaagctcacatctgggctctggaaggtctctctcatctggtggctgcttctttctct
gaggataagtacggagtggtacagactacattacccagcatcctcggctgcatgctgtct
ctgcaagaggctgtggacagacactttaagttgcctcatgcttccagtaagccggtgaag
accagctgcagtatgggagactccacctacaaaaccctgcgctttgctctgagggccgcc
ctgaagacctccatctacaggatcacgtctacgtttggagagcacttaaatgcggtgtgt
atctcagcagagcatcagaagagactgcagcagttcatggagtacagagagtaa
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