Astyanax mexicanus (Mexican tetra): 103042150
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Entry
103042150 CDS
T05042
Symbol
nup88
Name
(RefSeq) nucleoporin 88
KO
K14318
nuclear pore complex protein Nup88
Organism
amex
Astyanax mexicanus (Mexican tetra)
Pathway
amex03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
amex00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
103042150 (nup88)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
amex03019
]
103042150 (nup88)
Messenger RNA biogenesis [BR:
amex03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
103042150 (nup88)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nup88
DrrA_P4M
STX6_10_61_N
Motif
Other DBs
NCBI-GeneID:
103042150
NCBI-ProteinID:
XP_007245323
Ensembl:
ENSAMXG00000007459
UniProt:
A0A8B9HHL3
LinkDB
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Position
1:complement(27696290..27713764)
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AA seq
721 aa
AA seq
DB search
MAALSGERWRECLPEHEMIKKLQERLHLESQGTSRRIAKNLTFCLNGDFFIWDNVESVFY
TTNLRQINSDEEPDSRYQTLLCINPPLFEVCQVLLSPTQYHVALIGQRGATVLELPQRWG
KKSEFEGGRMEINCKTIPVAERFFTSSTSVTLRQAAWFPSETEEPHLVLLTSDNTIRFYN
LKEPQTPARVLPVSQSEEETSVHTRGRSYAASLGEIAVAFDFGPLVDVPRQLARQRLSDD
LLVYPLYILYENGETFLSYTSLTHTTLGKLLGPLPMYPAAEDNYGYDACAVLCLPCVPNI
LVIATETGMLYHCVVLEAEEEEDGGSVERWSRGSETVPSLYVFECVELELTLKLPAGEEE
DIVESDFTCPIRLHRDPLCQHRYHCTHEAGVHSVGLSWFNKLHKFLQSDEEDKDSLQELA
AEQRCIVEHILCTRPLTSSLPAPVRGFWIVSDLSLGATMICITSTYECLLLPLLSSIRPP
SPPLLCSRVGTLEGSGNSPLRGLAEDSFEQHIRNILARTSTNPLMMRAGDKDTSTPTPEC
LQLLSRATQVFREEYILKLDLAREEMQRRVKLLTGQKNKQLEDLALCREERKSLREAAER
LADKYEDAKYRQEAIMNRMKRVLGSLRNQLPVLSDSEKDMKKELQTINDQLRHLDNTITQ
VNMKKEYQTKQMDKGLLTPARARITLNAHQRKCIQGVLKEQGEHIGDMMKQIKDIKNHFS
F
NT seq
2166 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgctgtcgggggagcgttggagggaatgtctgccggagcatgagatgattaaa
aagctccaggagaggcttcatttagagtcacagggcaccagcaggaggatagcgaagaac
ctgaccttctgtctgaacggagacttcttcatctgggacaacgtggagagcgtgttctac
actacaaaccttcgacaaatcaactccgatgaggagcccgactccagataccagactttg
ctgtgcatcaacccgcccctttttgaagtgtgtcaggttctgctcagccccacccagtac
catgtggctctcatcggtcagcgtggggcaacagtgctggagttgcctcagcgatggggc
aagaagtctgagtttgaaggtggacgtatggaaataaactgcaagactattcctgtggct
gaacgcttcttcaccagctctacctccgttaccctgaggcaggctgcttggtttcccagt
gagacagaggagcctcacttggtgcttctgacctcagacaacaccatcagattctacaat
cttaaagagcctcagactccagctagagtgcttccagtctctcagtcagaggaggagacc
agtgtccacacaagagggcgctcttatgcagcctctctgggtgagatcgctgtggcgttt
gacttcggcccgcttgtggacgtcccccgtcagcttgcccgccagcggctgagtgacgac
ctgctggtgtaccccttatacatcctctacgagaacggagagacctttctgagctacacc
tctctcacacacaccactctggggaagctgctgggtcctctccccatgtaccctgctgct
gaggataactatggctatgacgcctgcgcagtgctgtgtctgccctgtgtacccaacatc
ctggttattgccacagagacaggcatgctgtatcattgtgtggtgctggaggcagaggag
gaagaagacggtggatctgtggaaaggtggtcccggggctcagagaccgtgccctccctc
tacgtatttgagtgtgtggagctggagctcacgctcaaacttcccgctggagaggaggag
gacattgtagagtcggacttcacctgcccaatcaggttacacagagatccactatgtcag
caccggtatcattgcacccatgaggcaggtgttcacagtgtgggtctctcctggttcaac
aaactccacaagttcctgcagtcagatgaggaggataaagacagcctgcaggagctggca
gctgagcagcgctgcatagtggaacacatactctgtaccagacctctcaccagcagtttg
ccagctccagtgcggggtttctggatcgtgtctgatctttctctgggcgccaccatgatc
tgtatcaccagcacttatgagtgtctcctgctccctctgctaagttccattcgtcctccc
tctcctcctctgttatgctcacgggtggggacactcgaggggtctgggaactctcctctg
cgtggactggctgaggactcctttgagcagcatatccgtaatatactggcacgtacttcc
accaacccgctgatgatgagggcgggggataaggacacctcaacacccactccagagtgt
ctgcagctgctgagcagagccacacaggtcttccgtgaggaatatatacttaagctggac
ctggccagagaagaaatgcagagaagagtcaaactgctgacgggtcagaagaacaagcag
ctggaggacctggcactgtgcagagaggagcgaaagagcctgagggaggcagcagagcgg
ctggctgataagtatgaagatgccaaatatcgccaggaagccatcatgaacaggatgaag
cgggttctaggaagtctgcgcaatcagcttcctgttctgtctgacagcgaaaaggacatg
aagaaagaactgcagaccatcaatgaccagctccgtcacctagacaacaccatcacacag
gtcaatatgaaaaaggagtaccagacgaagcagatggataaaggcctcctgactccagct
cgagccagaatcacgctgaacgcccaccagaggaagtgtattcagggggtcttgaaggag
cagggtgagcacatcggcgatatgatgaaacaaatcaaggacatcaagaaccatttcagt
ttctga
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integrated database retrieval system
