Astyanax mexicanus (Mexican tetra): 103042292
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Entry
103042292 CDS
T05042
Symbol
ddx39b
Name
(RefSeq) DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
amex
Astyanax mexicanus (Mexican tetra)
Pathway
amex03013
Nucleocytoplasmic transport
amex03015
mRNA surveillance pathway
amex03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
amex00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
103042292 (ddx39b)
09122 Translation
03013 Nucleocytoplasmic transport
103042292 (ddx39b)
03015 mRNA surveillance pathway
103042292 (ddx39b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
amex03019
]
103042292 (ddx39b)
03041 Spliceosome [BR:
amex03041
]
103042292 (ddx39b)
Enzymes [BR:
amex01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
103042292 (ddx39b)
Messenger RNA biogenesis [BR:
amex03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
103042292 (ddx39b)
Spliceosome [BR:
amex03041
]
Complex C
Other components
EJC/TREX
103042292 (ddx39b)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
103042292 (ddx39b)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
AAA_19
Motif
Other DBs
NCBI-GeneID:
103042292
NCBI-ProteinID:
XP_007231785
Ensembl:
ENSAMXG00000017837
UniProt:
A0A8B9HL38
W5LEW2
LinkDB
All DBs
Position
3:37560068..37585447
Genome browser
AA seq
436 aa
AA seq
DB search
MTENDVENELLDYEEDEVDAAGGVGDGTLAGDSGAMTIRKEGVKGSYVSIHSSGFRDFLL
KPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTG
QVSVLVMCHTRELAFQISKEYERFSKYMPAVKVAVFFGGLSIKKDEEVLKRESPHVVVGT
PGRILALSRNKSLNLRHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLS
KEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVI
FVKSVQRCIALAQLLVEQNFPAIAIHRAMPQEERLARYQQFKDFQRRILVATNLFGRGMD
IERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDARTLNDVQDRFEVNIS
ELPEEIDISSYIEQTR
NT seq
1311 nt
NT seq
+upstream
nt +downstream
nt
atgactgagaacgacgtggagaacgagctgttagactatgaggaggatgaagtagatgca
gcaggtggcgtcggggatggaacgcttgccggtgacagtggtgccatgaccataagaaag
gagggggtcaaaggctcttatgtgtccatccactcctcagggttcagggactttcttctg
aagcctgagcttctgagggccatagtggactgtggctttgagcatccgtctgaagtccag
cacgagtgcattcctcaggccattttgggaatggatgtgttatgccaggctaagtctggt
atggggaagacagctgtgttcgtgttggctacactacagcagctggagccagtgactggg
caggtatcggtactggtaatgtgtcatacccgagagctggcgttccagatcagcaaagag
tatgagcgcttctccaagtacatgcctgctgtcaaggtggcagtgttctttggtggattg
tctataaagaaggatgaggaggtgttgaagagagagagccctcatgtggtggtgggaact
cctggccgtatcctggccctgtcccgcaacaagagccttaacctgcgacacatcaaacat
ttcatcctggacgagtgcgacaagatgctggaacaacttgacatgcgccgtgacgtccag
gagatcttccgcatgacccctcacgagaagcaggtcatgatgttcagtgccaccctgagc
aaagaaatccgccccgtctgccgaaagttcatgcaagatccgatggaaatatttgtggat
gacgagaccaagttgactctgcatggcctgcagcagtattacgtcaagctgaaggacaac
gagaagaacaggaaactcttcgacctgctggacgtgctggagttcaaccaggtggtgatc
ttcgtgaagtcggtgcagcgctgcattgccctcgctcagctgctggtggagcagaatttt
cctgccatcgcgatccacagagcaatgccccaggaggaaaggctagctcgatatcagcag
tttaaggattttcagagacgaatccttgtggccactaacctgttcggcagaggaatggat
atcgaaagagtcaacattgccttcaactacgacatgcctgaggattctgacacatacctg
cacagggtggcgagagcaggccggtttgggacgaaaggtttggccataacgtttgtgtct
gatgaaaacgatgcccgtacactgaatgatgttcaggacaggtttgaggtgaacatcagc
gagcttccagaggagattgacatatcatcctacatcgagcagacgcggtaa
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integrated database retrieval system
