Astyanax mexicanus (Mexican tetra): 103042509
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Entry
103042509 CDS
T05042
Symbol
stau1
Name
(RefSeq) double-stranded RNA-binding protein Staufen homolog 1 isoform X1
KO
K17597
double-stranded RNA-binding protein Staufen
Organism
amex
Astyanax mexicanus (Mexican tetra)
Brite
KEGG Orthology (KO) [BR:
amex00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
amex01009
]
103042509 (stau1)
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
amex03019
]
103042509 (stau1)
Protein phosphatases and associated proteins [BR:
amex01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
103042509 (stau1)
Messenger RNA biogenesis [BR:
amex03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Trans-acting binding proteins
103042509 (stau1)
mRNA cycle factors
Stress granule specific factors
103042509 (stau1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
dsrm
Staufen_C
DND1_DSRM
Dicer_dsRBD
Motif
Other DBs
NCBI-GeneID:
103042509
NCBI-ProteinID:
XP_049335086
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All DBs
Position
5:10371255..10380860
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AA seq
700 aa
AA seq
DB search
MSQVQFQSPTTTTTMASSAPVQLTPPQPGFSIPSPSGSLPSESASHPLRSSALPSASATP
FCNPTVSNMANPKEKTPMCLVNELARYNKIQPEYKLLSEQGPAHSKIFSVRLTLGEQHWD
AEGTSIKKAQHSAAACALAQTSLPKPSNRGPRHQGRNPGGFYKGESDSMTHTVELNALCM
KLGKKPMYKPIDPYQGMRPAFNYNIRAPGPYARSMQQYYYPFPPVGPMLYHMELSIGGQQ
FHGKGRTRQAAKHDAAAKAIKTLQKEPLLQQLEEMNEEPEEENLNKSEISQVFEIALKRN
MPVNFEVLKEAGPPHMKSFVVKVMVGEFTGDGEGKSKKIAKKLAAIAVLEELRKLPQLPV
TDKMPQRIKKKTKSIIKLQTSPEYGQGINPISRLAQIQQAKKEKEPEYSLVTERGLPRRR
EFVMQVSVAGQTAEGMGPSKKVAKRNAAEKMLELLGFKVPQPQPPKPALKTDEKPPLKKP
GDGRKVTFFEPGSGEEGGLVPKEEDFRLPFLSHQQLPAGILPMVPEVAQAVGASQGPHAK
DYGRPNQAKTSMTAMIANELLYGGTSATAEGVLKGSKNLSQRPNGPLTRPSEQLGYLASV
QGLQVEYKDFPKNNKNEFVSLINCSSQPPLISHGIGKDVESCHDMAAFNILKLLSELDQQ
SNDRPTNGPISGCGKQDLEGDSLIKPVNSSTMAKSLDSTV
NT seq
2103 nt
NT seq
+upstream
nt +downstream
nt
atgtcccaggttcagttccagtcccccaccaccaccaccactatggccagttctgcccct
gtacaactgaccccaccccagcctgggttcagcattccctctccttctggctccctacct
tcagagagtgccagtcatccactacgaagctccgccttgccctcagcctcagccacgccc
ttctgtaaccctacagtatctaacatggcaaaccctaaagagaagacccccatgtgttta
gtgaatgaattagcccgttacaataagatccaacctgagtataagcttctcagcgagcaa
ggaccagcccactccaagatattctctgtgcggttaactctgggggagcagcactgggat
gcagaggggaccagcataaagaaagctcaacactctgcagcagcttgtgctcttgcccag
acgtcgctgcccaaacccagcaacagaggacctcgccatcagggcaggaacccaggtggg
ttctacaagggcgagtcagacagcatgacgcacactgtggagctgaatgcactttgtatg
aagttgggaaagaaaccaatgtacaaacctatagacccctaccaagggatgagacctgca
ttcaactacaacatcagagcaccagggccttatgcccgctccatgcaacagtattactac
ccgtttcctccagtggggccaatgctttatcatatggagctgtctattggagggcagcag
tttcatgggaagggccgcacacggcaggctgctaaacatgatgctgctgctaaagctata
aaaactttgcagaaagagccgctgctccagcagctggaagagatgaatgaagaaccagaa
gaagaaaacctcaacaaatctgagattagccaagtgttcgagattgcactgaaacggaac
atgcctgtgaactttgaggtgctgaaagaggccggacctcctcatatgaagagctttgtg
gtgaaagtgatggtgggagagttcacaggagacggggagggcaagagcaaaaagattgct
aagaagttggccgccattgctgtgttggaggagctgcggaagctgccacagctgcctgtt
acagacaagatgccccagcgcattaaaaagaaaaccaaatccattataaagctgcagacc
agtccagaatatggacaaggcataaacccaatcagcagactggctcagatccagcaagct
aagaaggagaaggagccagagtacagcctggttacagagaggggactgccccgacgtaga
gagttcgtcatgcaggtgtcagtcgctggtcagactgcagagggtatgggtcccagtaaa
aaggtggcaaaacggaatgctgcggagaagatgctggaactcctgggcttcaaagtgcct
cagcctcagcctcccaaaccggcactgaaaactgatgaaaagccacctctaaagaaacct
ggagatggacgtaaagtgaccttttttgagccgggatctggggaggaggggggtcttgtc
ccaaaggaggaagacttccgcctgcccttcctcagccaccagcagctccctgctggcatt
ttacccatggtgcctgaggtagcacaagcggtcggcgccagccagggaccccatgccaag
gactatggccgtcctaaccaggccaagacctcaatgaccgcaatgattgccaatgagctg
ttgtacggtggtacgtccgctactgctgaaggcgtactgaagggaagcaaaaatctgtct
cagagacccaacgggcccctcactagaccatctgaacagctcggctacctggcttctgtg
caaggtctacaggttgaatacaaagattttcccaaaaacaacaagaatgagtttgtgtct
ctgatcaactgctcctctcagccaccgctgataagccacggcattggcaaggatgtggag
tcctgtcatgatatggctgccttcaatatactgaagttgctttcagagctggaccagcag
tccaatgatcgcccaaccaatggaccgatctctgggtgtggcaaacaagacttggagggc
gactcattgatcaaaccggttaactcgagcaccatggcaaaaagtctggatagcaccgtc
taa
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