Astyanax mexicanus (Mexican tetra): 103042624
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Entry
103042624 CDS
T05042
Symbol
rbm39a
Name
(RefSeq) RNA-binding protein 39a isoform X1
KO
K13091
RNA-binding protein 23/39
Organism
amex
Astyanax mexicanus (Mexican tetra)
Brite
KEGG Orthology (KO) [BR:
amex00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
amex03041
]
103042624 (rbm39a)
Spliceosome [BR:
amex03041
]
Common components
Common spliceosomal components
General mRNP proteins
103042624 (rbm39a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RBM39linker
RRM_occluded
PRP38_assoc
RRM_5
RBD_DEAH11
RRM_7
RSRP
CDC45
Motif
Other DBs
NCBI-GeneID:
103042624
NCBI-ProteinID:
XP_007234797
Ensembl:
ENSAMXG00000013781
UniProt:
W5L2Y1
A0A8B9JXT7
LinkDB
All DBs
Position
24:complement(18147228..18157695)
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AA seq
529 aa
AA seq
DB search
MADDFDIEAMLEAPFKKDETKSVNSNGHEERSKKKKKSRSRSRSRDRKRSKSRERKKTRS
RERSRERKRSRSREKKRSRSRDRRRSRSKSRERGGRFRPTFSGLKFNGGSRGKTGPPPAV
KLSRRRSRSRSPFKREKSPIRQPIDNLTPEERDARTVFCMQLAARIRPRDLEEFFSAVGK
VRDVRMISDRNSRRSKGIAYIEFVDSTSVPLAIGLSGQRLLGVPIIVQASQAEKNRAAAM
ANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIDSIQLMMDTETGRSKGYGFITF
ADAECAKKALEQLNGFELAGRPMKVGHVTERTDASTASSFLDNDELERTGIDLGTTGRLQ
LMARLAEGTGLQIPPAAQQALQMSGSMVAMAAATAAMNPGLSFNLNMPPNQALNLPSQPI
ATHCFQLSNMFDPHSENDPGWDIEIQDDVIEECNKHGGVIHIYVDKKSAEGNVYVKCPTI
PAAMAAVSALHGRWFGGKMIKAAYVPLPTYHNLFPESVQATQLLMPIRR
NT seq
1590 nt
NT seq
+upstream
nt +downstream
nt
atggctgacgactttgacattgaagcaatgcttgaggcaccatttaaaaaggatgagacc
aagtccgtaaattccaatggccatgaagagcggagcaagaagaaaaagaagagcagaagt
cgtagcaggagtagggaccgaaaaagaagcaagagccgggagcgcaaaaagaccaggagc
cgggagaggagtcgggagcgcaagaggagccgtagccgggaaaagaagcgcagccggagc
cgggaccggcgccgcagccgctccaaaagcagggaacgtggaggtcgtttccgcccgacc
ttttctggcctgaaatttaacggtggttccagggggaagactggcccaccacctgccgtc
aaactaagccgtcggcgatctagaagccgcagccctttcaaaagagagaaaagtcccatt
cggcaacccatagataacctcacaccagaggagagagatgcacgcacagttttttgcatg
cagcttgctgccagaattagacctcgggacctggaagagttcttctctgctgtgggaaaa
gtgagagatgtgaggatgatctcagacagaaactccagaagatccaaaggaattgcctac
attgaatttgtagactccacatctgtgcctctggcgattggcctctctggacaaaggctg
ctaggagtacccatcattgttcaggcttcacaggctgaaaagaacagagcggctgcgatg
gccaacaatctgcaaaaaggcagtgctggacctatgaggctttatgttggatcccttcac
tttaacattacagaagacatgctcagaggaatatttgaaccttttggacggattgacagc
attcagcttatgatggacactgaaacagggagatccaaaggatatggctttattacattt
gctgatgctgaatgcgctaagaaagctttggagcagctcaatggctttgagctggctggt
cggccaatgaaagttggtcatgtgacagagcgcaccgatgcctctacagcaagttcattc
ttggataatgatgagctggagaggactggcattgaccttggtactactggaaggctgcag
ctcatggccagactggcagagggtactggtctgcagatccctccagctgcacagcaggct
cttcagatgagcggctccatggttgcaatggctgcagctacagcggccatgaatcctgga
ttaagttttaatctcaacatgcccccaaatcaagctttaaatctaccatctcagccaatc
gccacgcactgctttcagctctcaaacatgtttgacccacactcagagaacgatcctgga
tgggatatcgaaatccaggatgatgtaattgaagaatgtaacaaacatggcggtgtcatt
catatatatgtagacaagaaatctgcagaggggaatgtatatgtgaagtgtccgacaatc
cctgctgcaatggcagcggttagtgcattacatggccgttggtttggaggtaaaatgatc
aaagctgcatacgtccctctgccaacataccacaatctcttccctgagtcggtgcaagca
acacaactcctcatgccaattcgccggtga
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