Astyanax mexicanus (Mexican tetra): 103042767
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Entry
103042767 CDS
T05042
Name
(RefSeq) trinucleotide repeat-containing gene 6A protein isoform X1
KO
K18412
trinucleotide repeat-containing gene 6 protein
Organism
amex
Astyanax mexicanus (Mexican tetra)
Brite
KEGG Orthology (KO) [BR:
amex00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
amex03019
]
103042767
03036 Chromosome and associated proteins [BR:
amex03036
]
103042767
Messenger RNA biogenesis [BR:
amex03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
103042767
Chromosome and associated proteins [BR:
amex03036
]
Eukaryotic type
Gene silencing
piRNA pathway
103042767
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TNRC6-PABC_bdg
Ago_hook
RRM_1
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
103042767
NCBI-ProteinID:
XP_049323971
Ensembl:
ENSAMXG00000019919
LinkDB
All DBs
Position
19:13563923..13623464
Genome browser
AA seq
1761 aa
AA seq
DB search
MAPIRDSVSHSSNQTGLDHAGLDTQYENSSWTSSSPCSNSNSSWAKVIVDGCDKGPWPSI
TGSDPELASECMDADSASSSGSEKNLSMMASGTASGDNNGNRQGSHFLVTNGSNNVANGS
SKGPWGVSNGSMLSTCPGSGESPSGKLAEGSHGKMNAWGSQGSSTNGGINPSTLNPNANH
GAWPVLQNTGSNPHGPVGSGNGGTTIQRSTIGQPPGMQSIHSKMSWGSLQESVAESKVNG
TNKVLSGQPQNLNTEFNGPNNTTNTMTSSLPNSTGSVHMNEQPPGHRAWPVSTGGSPQLQ
VSPVSNGTSISQHSNSEGMNSSSGSYGTVWGAAPGTNYSGDKCPVPKGQAVGDTVNATLM
QPGANDSSVSATTFKNNNNNGMGGRGGSWDSGSSPAQSMTWGSGNSASPAVAPRPWGSAS
SSSSSSSSSSNTGTKVSNGEWNSLPSNNQHSSDCANGSRKGTNGWKSLEDDALGLGSAGQ
SSQGSTWNKSTGSEGSGESSAGRSERDVQRNGNRRRGNQQTVVQAALSRTDMDPRVLSNT
GWGQTPVRQNIAWDLSNSKTAGNGLQGCGTAPAQQSNSGGWGDGPNSKSGDSTMSNWGEQ
KQTSGWGENTKTPGGQNGWEDSSVGSSKGNSWGNGKDDKSSSWNGGQKAKQGWGSSSGEV
WGGEGSRGNHWGEPQKSGSGGWDRDSDSDRSGSGWSDAGRGKTWGGSGGTNTPDQGGPTT
GWGEPVKANNQSQSWGEPIKPSHSNQAWGGEAAKPTNPSQDWVKPQDTSMGTFRVGSSSQ
TGTQNKPSGWLGGPIPAAPKEEESTGWEEPSPESVRRRMEIDDGTSAWGDPSKYNYSNVN
MWNKNSSSEQDGMPGSQQQQQPPPPPPPSSMGQKEKICSSGWGEPYGGPQKMESSTWGEP
PGPPVTVDNGTAAWGKPMETGSSWEDSSREGAGGSSWGSTVGQATQHKPGPKPMQDSWGG
EDMSIHGTSNWGEEEEEVEIGMWNNNTSQEMNQTGNWSYMKKMPPKINKGPSKPDDPWMN
QFVKQFNNMNFPRDSEESMKSNKMDMPRGGMMTDKRMDVDKHVLNVGDYGKSSASRHQIH
KESPMDRSPYMEKLALPVSAYDSPVTEETQNSHSSMSFTPSKPTQPNQSPGSNHTAVRQN
VNMYGSGNTAAQVRNPQQPPAQPLNSAQPNLRNQVPPPLLPSQVPPSMLKYPSSNGGLNP
LFGPQQVAMLNQLSQLNQLSQLSQINQLQRLLIQQKAQNQRAMSGNGRQVQEQQSRGLGP
SPMIQPPRHLDPSLLKQQTSPQPPTLHQPGLKSYMDNFMHPSSSDLQKEQNTLNSFTNFP
LGLNSNLNVNNLDIGSVGFKEPQSRLKKWTAMDISVNSPLDQTPSKPGAMSSALRLEDSP
FGPYDFMNASSSPITAPGSVGDGWPNRAKSPHGSTNVNWPPEFRPGEPWPGYPNIDPETD
PFVTPGSVINNLSINTVRDVDHLRDRNNGPSSSLNTTLPSNSAWTSIRASNHSSSLSSTA
QSTSARNSDSKWSPGSVTNTSLAHELWKVPLPSKGMSAPSRPPPGLTGQKQPSSWDSGPL
RMAGWGNSESRYTPGSSWGDSSSGRTNWLVLKNLTPQIDGSTLRTLCMQHGPLITFHLNL
PHGNAVVCYSSKEEAAKAQKSLHMCVLGNTTILADFASEEEINRFFAQGQSMTASPSWQT
LASSQNRIGSMEGSHAFPNRTDPSHWNGGDLHGSSLWGGPNYSSSLWGSSGSGGEGGRIS
PSPISSFLPVDHLTGSGGDPM
NT seq
5286 nt
NT seq
+upstream
nt +downstream
nt
atggctcccattcgggactcggtcagccactcctctaaccaaacaggattggatcacgct
ggtctggacacgcagtatgagaattcttcttggacctctagctcaccttgcagcaactct
aacagcagctgggccaaagtcattgtagacggctgtgataagggaccctggccctccatc
actggtagcgacccagagttagcctcagaatgtatggatgctgactccgcatccagctct
gggtctgagaaaaacctcagtatgatggcgtctggaactgccagtggtgacaacaatggc
aatcgacaaggttctcattttttggttacaaatggcagcaataacgttgctaacgggagc
tctaaggggccttggggtgtctccaacggctcaatgctaagcacatgtccaggctctggg
gagagtcccagtggcaagctggcagaaggtagtcacggcaagatgaatgcatggggatcc
caaggttcctcaaccaatggaggtataaatccaagcactttgaacccaaatgccaaccat
ggtgcctggcctgttctacagaacactgggtccaacccccatgggcctgtaggcagtggg
aatgggggcaccaccattcaacgaagcaccataggtcaaccccctggcatgcagagcatc
cactctaagatgtcctggggtagcctgcaggaaagcgttgcagaatctaaagtcaatggt
acaaacaaggttctaagtgggcagcctcaaaaccttaacactgaatttaatggaccaaat
aacactactaacacaatgacctctagtttaccaaactctacaggttccgtgcatatgaat
gaacagcccccagggcaccgagcctggcctgtgagcacagggggctcccctcagctccaa
gtatctccagtctctaatggcacttccatttctcagcatagtaacagcgagggaatgaac
agcagcagcgggtcttacggtacagtgtggggcgctgcccctggcactaattactccgga
gataaatgccctgtccctaaaggccaagctgtgggcgacactgtgaacgcaactctaatg
cagccaggagccaacgactcttctgtgagcgctactactttcaagaataataataataac
ggcatgggtggccgtggaggaagttgggactctgggtccagtcctgctcagagtatgact
tgggggtcagggaacagcgctagtccagcagtggccccgcggccctggggtagtgcttcc
tcctcgtcctcatcctcctcctcgtcttcaaacactggcactaaggtctcgaatggagag
tggaactcattgcccagtaacaatcagcattccagtgactgtgcaaatgggagcaggaag
ggaacaaatggctggaagtccttggaggatgatgctctcggattagggagtgctggtcag
tcatcccaaggcagcacatggaacaaatctacaggtagcgaaggaagtggggaaagctct
gcaggtcgtagtgagcgagatgtgcaacgcaatggcaaccgcagaaggggcaaccagcaa
actgtagtacaggcagctctctcgaggacagatatggacccaagggtgctgtccaacaca
gggtggggccagacacctgtccgccagaacattgcctgggacctctccaactcaaagacg
gccggcaatgggttgcagggctgcggtactgctcctgcccaacagtcaaactcaggtggg
tggggggatggacccaacagcaaaagtggtgactctaccatgtctaattggggcgagcag
aagcagacctctggttggggagaaaacacaaaaaccccagggggtcaaaatggctgggag
gactcctctgttggatctagcaagggtaactcttggggaaatggcaaggacgacaaatct
tcctcttggaatggtggacagaaggcaaagcaaggatggggtagttcttccggtgaagtc
tggggtggagaaggctcaagagggaaccactggggcgagccccagaagtctgggtcagga
ggttgggacagggatagcgatagtgaccgctctggctccggctggagtgatgcaggccgt
ggcaaaacctggggaggaagtggaggaactaatactcccgatcaaggtgggcctaccact
ggatggggagaacccgtgaaggcaaacaatcagagccaaagctggggtgagccaatcaaa
ccaagtcactccaaccaagcctggggcggtgaagctgcaaaacccaccaacccgtcccag
gattgggtcaagccccaggataccagcatggggacattcagagtaggcagcagctctcaa
actggaacccagaacaagccatccggttggcttggtggtcccatacctgctgctccaaaa
gaggaagaatctactggttgggaagaaccgtcccctgagtccgtccggcgcaggatggag
atcgacgatggaacttctgcgtggggagaccccagcaaatacaactacagcaatgtcaac
atgtggaacaagaacagctcttcagagcaggatggaatgcctgggtctcagcagcagcaa
cagcctcctcccccacctcccccaagttccatgggccagaaggagaagatctgcagctca
gggtggggtgaaccatatggtggtccacaaaaaatggagtcctcaacgtggggggagcct
ccgggtccacctgtcaccgtggacaatggcactgccgcctggggaaagcccatggagaca
ggctccagctgggaggattcgagcagggagggtgccggaggcagcagctgggggtccacc
gtgggccaggcgacacagcacaaacccggacccaaacctatgcaagacagctggggtgga
gaggacatgtctattcatggaacatcgaactggggcgaggaggaggaagaggtagagatt
ggcatgtggaacaataacacatcacaggaaatgaaccaaaccggaaactggtcatacatg
aaaaagatgcctcccaagataaataaaggacccagcaagccggatgatccgtggatgaac
cagtttgtgaagcagtttaacaatatgaattttccaagggactctgaagaatccatgaag
agcaataagatggacatgcctagaggagggatgatgacagataagcgtatggatgtcgac
aaacatgtcctaaatgtgggagattacggaaagagctccgcttcacgccatcagatccat
aaagagtcacccatggaccgcagtccctacatggaaaagcttgcattgcccgtttctgcc
tacgatagcccagtaactgaggaaacccaaaactcacatagcagcatgagctttacacct
tcaaaacctacccaacctaaccagagccctgggtccaaccacactgctgttaggcagaat
gtgaacatgtatggtagtggtaacacagcagcacaggtccggaacccccagcagcctcca
gcacaacctctaaactctgctcagcccaatctccgtaaccaagtgcctcctccactgctc
ccctctcaggtcccaccatccatgttgaagtacccctctagtaacggtggtttgaacccc
ctgtttggaccccaacaggtagccatgctcaatcagttgtcacagctcaaccagctgtcc
caattatcccagattaatcagctccagcgtctcctcatccagcagaaagctcagaatcag
agagcaatgtctggaaatggacgtcaggttcaggagcagcagtctcgtggcctgggcccc
tccccaatgatacagccccctcgccatttggacccctccctactgaaacagcagacgtcc
ccccagccacccaccctgcaccagcctggacttaagtcatacatggacaacttcatgcac
cccagcagctctgacctgcagaaagaacaaaacaccctcaactccttcaccaacttccct
ttaggcttgaactcaaacttgaatgtaaacaaccttgatattggtagtgttggatttaag
gagccgcagtctcgtctgaagaagtggactgctatggacatttccgttaactcgccactt
gatcaaacccccagcaaacctggtgctatgtcctctgctctgaggcttgaagattccccc
tttggtccatatgactttatgaatgccagcagctcccccatcactgctcctggatcggtg
ggggacggctggcccaaccgtgccaaatcacctcatggatccaccaatgtaaactggcca
ccagagttccgtcctggtgagccctggccaggctatccaaacatcgaccctgaaacggac
ccatttgtcactcctggcagtgtgattaataatctctccatcaatacagtccgggatgtt
gatcacctcagggacaggaacaatgggccatcctcatcacttaacaccacgctgccttca
aatagtgcctggacatccattcgtgcctccaaccacagtagttccctcagcagtacagca
caaagcacttcagccagaaacagtgactccaaatggtcccctggttccgttaccaacacc
tccttggctcatgagctgtggaaggttcccctcccatcaaaaggcatgtccgctccgtcc
cgtccccctcctggcctgacggggcaaaaacagccctcctcctgggacagcggccctcta
agaatggctggctggggcaactctgaatccagatacaccccaggctccagctggggtgac
agcagctcaggaagaaccaattggcttgttctcaaaaatctcacacctcagatcgatggc
tctaccctgcgcactttgtgcatgcagcacggtccactgataacattccacctaaacctg
ccccatggaaacgccgtggtctgctacagctccaaggaggaggcagccaaggcccagaag
tcactgcacatgtgtgttttagggaacactactatacttgctgatttcgctagtgaagag
gaaattaaccgtttctttgcacaaggtcagtccatgaccgcctcgccgagctggcagaca
ctggcctcttctcagaaccgcatcggatccatggagggttcgcacgccttccccaaccgc
actgatccaagccactggaatgggggggacctgcacggctcctcactctgggggggtccc
aactactctagcagcctgtggggcagctccggcagcggtggcgagggggggcgcatcagc
ccaagtccaatcagctccttcctcccggtggatcacctcacaggcagcggtggggacccc
atgtag
DBGET
integrated database retrieval system
