Astyanax mexicanus (Mexican tetra): 103042816
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Entry
103042816 CDS
T05042
Symbol
smc5
Name
(RefSeq) structural maintenance of chromosomes protein 5
KO
K22803
structural maintenance of chromosomes protein 5
Organism
amex
Astyanax mexicanus (Mexican tetra)
Brite
KEGG Orthology (KO) [BR:
amex00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
amex03400
]
103042816 (smc5)
DNA repair and recombination proteins [BR:
amex03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
SMC5-SMC6 complex
103042816 (smc5)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SMC_N
AAA_23
AAA_15
AAA_21
AAA_13
AAA_29
FtsK_SpoIIIE
Rod_CreS
AAA_25
ABC_tran
DUF7946
Motif
Other DBs
NCBI-GeneID:
103042816
NCBI-ProteinID:
XP_022542878
Ensembl:
ENSAMXG00000020845
LinkDB
All DBs
Position
20:complement(23079326..23101771)
Genome browser
AA seq
1082 aa
AA seq
DB search
MALQSKKRRISHILTNSQLPNSQNLLLPCSSQNGSFAQENGQSGPCVEGSIRRITMQNFL
TYDHSEVYPGPNLNMIVGANGTGKSSIVCAICLGLAGKTAILGRGDKVSLYVKRGCHKGS
VEIELYRKEGNLVINREIHVENNQSVWMMNGKHSSQKAVEEAVKELQIQVGNLCQFLPQE
KVGEFAKMSKIELLEATEKSVGPPEMYNFHCELKTCRTKERDLENLCKEKANFLEKAKQR
NERNKVDVERYHMKRRHLDMIQMLEKKKPWVEYETARKELEEVKKQREEMKKTAKSLKET
QAPLLKKIQAMESKLQPIENQMKEKTVKIREASQRCKHKQDQLDRKHKEIDDIKQALSLK
QTEETDRQKRIGNTQRMIQDLQRELDNMGSQEDVTPKIEKVNADLRTILEEKARLDGEQQ
DLRRDKDEGFGELRRLQIRLRGLEDMMNRKEEMLRNRFRDTYQALQWLRKNRNLFEGNVY
EPMMLVINVRDPKFAKYIESHVPVNDLRAFVFQKQRDMEKFMSEVRDNQKLRVNSVIAPL
ESCANRPPSRPLESLKRFGFISYLRELFDAPDEVMSYLVHQYRVNDVPVGTEKTKSMIET
VIKESQLRMIYTAEEKYTVKKSAYSNKTISSNSALRPSQFLSMAIDSEEKRQLEEQLSAA
QQKVEDVDARMKSIQEQQGKLDRRDNELRTEKKRLSEIKGKKRQLEQKISTKQDSLRQME
QSGINLQEAEEEAKAKISDVNDQKVAIVEEILNFMKLRAKLSMEKVYLALESAGLAAEKT
QLESDLREGSAELRRAEQEFAQLDQRKTSLLGTCKSLMRRASEICNMNPGETVVPEILRT
AFSELPDTLDEIDAMLNEERARAECFTGLNEAVVEEYSKREKEIKNMEKELEEKTKALNE
YRQNISEAKERWLNPLKLLVEQINEKFSDFFRSMNCAGEVDLHSENEEEYDKYGIRIRVK
FRSNTQLHELTPHHQSGGERSVSTMLYLMALQELNRCPFRVVDEINQGMDPVNERRVFDI
VVKTACGGNTSQYFFITPKLLQNLTYAEEMTVLCVHNGPHMLPPNKWNDRAFLRRVKRRT
NQ
NT seq
3249 nt
NT seq
+upstream
nt +downstream
nt
atggcgctccagagcaaaaagaggagaataagtcacattttaacaaactctcagcttccc
aacagccagaacctgctgctgccctgcagctcgcagaatggcagcttcgcccaggagaac
gggcagagcggcccctgcgtggagggatccattcgccgcatcaccatgcaaaacttcctc
acatatgatcactcagaggtttaccctggacccaacttaaatatgatagtgggagccaat
ggcactggcaagtcgagtattgtctgtgccatttgtcttggactggcagggaagactgct
atcctgggcagaggggataaggtcagcttgtatgttaagagaggctgtcataaaggatct
gtggaaattgaactgtacaggaaagagggaaacttggtgattaacagggagatccatgta
gaaaataatcagagcgtgtggatgatgaacggtaaacactccagtcagaaggctgtggaa
gaagcagtcaaggagctccagattcaggtcggaaacctctgtcagtttctgcctcaggag
aaagttggtgaattcgctaaaatgagtaagattgagcttcttgaagccaccgaaaaatct
gttggaccaccagagatgtacaacttccactgtgagctgaagacctgtcgcaccaaagag
agggacctggagaatttgtgtaaagagaaggccaactttctagagaaagcaaagcagagg
aacgagcgcaataaggtggatgtggaacggtaccacatgaagaggagacatctggatatg
atccagatgttggagaaaaagaagccttgggtggagtacgagacagctcgtaaagaactg
gaagaagttaaaaagcagagggaagaaatgaaaaagacggcaaagtcactaaaggaaact
caagctccccttctgaaaaagatccaggctatggaaagcaagctacagcctattgagaat
cagatgaaggagaagactgttaaaatcagagaggcgtcacagagatgcaaacacaagcaa
gaccagctggaccggaaacataaggagattgatgacatcaagcaggcccttagtctgaag
cagactgaggaaactgatcggcagaagcgaatcgggaacacgcaacgaatgatccaagac
ctgcagagggagctggataacatgggcagccaagaggatgtcacaccaaagattgaaaaa
gtcaacgctgatctcaggaccatcttggaggagaaggccaggctggatggagagcagcag
gatctgcgcagggataaagacgagggcttcggggagctgagacgtctacagattcgtctg
aggggtctagaggacatgatgaacagaaaggaggaaatgttgcgcaaccgcttccgggac
acctaccaggccttacagtggttgaggaagaaccgcaatcttttcgagggaaatgtctac
gagcccatgatgctggtgatcaatgttcgagatccaaaatttgcaaaatacattgagagc
cacgttcccgtcaatgacctgagagccttcgtcttccagaagcagcgggatatggagaag
ttcatgtcagaggttagagataatcaaaagctgagagttaacagcgttattgcacctttg
gaatcctgtgctaatcggccaccatcacgacccctcgaatctctcaagcgctttggattc
atctcctacctccgagagctgtttgatgcacctgatgaggtcatgagttacctggttcat
cagtacagagtcaatgatgttcctgtgggcactgaaaagaccaagagcatgatcgagacg
gtgataaaagaatctcagctgaggatgatctacactgcagaggagaaatacacagtgaag
aaatccgcctactccaacaagaccatctccagtaactccgccctgcgcccctctcagttc
ctcagcatggccatcgactctgaggagaaacggcagctagaagaacagctgagcgcggct
cagcagaaggtggaggacgttgatgctcggatgaaatccattcaggagcagcagggaaaa
ctggaccggcgggacaacgaactccgcactgagaagaagcgtctctcggagataaaaggc
aagaagagacaactggagcagaaaatcagcacaaaacaggacagcctgaggcagatggag
cagagcgggatcaaccttcaggaagctgaggaggaggctaaggccaaaatctctgacgta
aatgaccagaaggtggccattgtggaggagatcttgaatttcatgaagctgagagccaag
ctgagcatggagaaagtttacctggctctggagtcagcaggtctggcggctgagaaaact
caactggagtcagatctcagggaggggtcggcagaactcaggagagccgagcaagagttt
gctcagctggaccagaggaagacgagtctgttggggacgtgtaagagcttaatgaggaga
gccagtgagatttgcaacatgaacccaggagaaactgtagtaccagagattctgcgcacg
gctttcagcgagctgccggacactctggatgagattgacgccatgttaaacgaagagcga
gccagagcagagtgcttcactggccttaatgaagcagtggtggaggaatacagtaagaga
gagaaggaaataaagaacatggagaaggagctggaggaaaagacgaaggctctgaacgaa
tacagacaaaacatctcagaggctaaggaacgctggctgaatcccttgaagctgttggtg
gagcagattaatgaaaagttcagtgatttcttccgctccatgaactgcgctggggaggtg
gacctgcactctgaaaatgaggaggagtatgataagtacgggatccggatccgggtgaag
ttccgcagcaacactcagctacacgagctgaccccgcaccatcagagcggcggagagcgc
agcgtctccaccatgctctacctcatggccctgcaggagctcaaccgctgccccttcaga
gtcgtcgatgagatcaaccagggtatggatccggtgaatgagaggagggtatttgatatc
gtggtgaagacggcctgtggtggaaacacatctcagtatttcttcatcacacctaagctt
ctacagaatctgacgtatgcagaggagatgaccgtcctgtgcgtacacaacggcccccac
atgctccccccaaacaagtggaacgacagggcttttctcaggcgagtcaaacggaggacc
aaccaataa
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