Astyanax mexicanus (Mexican tetra): 103043388
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Entry
103043388 CDS
T05042
Symbol
cltcl1
Name
(RefSeq) clathrin heavy chain 1 isoform X1
KO
K04646
clathrin heavy chain
Organism
amex
Astyanax mexicanus (Mexican tetra)
Pathway
amex04142
Lysosome
amex04144
Endocytosis
amex05100
Bacterial invasion of epithelial cells
Brite
KEGG Orthology (KO) [BR:
amex00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
103043388 (cltcl1)
04142 Lysosome
103043388 (cltcl1)
09160 Human Diseases
09171 Infectious disease: bacterial
05100 Bacterial invasion of epithelial cells
103043388 (cltcl1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
amex04131
]
103043388 (cltcl1)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
amex04147
]
103043388 (cltcl1)
Membrane trafficking [BR:
amex04131
]
Endocytosis
Clathrin-mediated endocytosis
Clathrin
103043388 (cltcl1)
Exosome [BR:
amex04147
]
Exosomal proteins
Proteins found in most exosomes
103043388 (cltcl1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Clathrin
Clathrin_propel
Clathrin_H_link
Clathrin-link
TPR_PEP5_VPS11
TPR_Vps41
LVIVD
Gp18_dom_I
capSnatchArena
HEAT_Nup120
Motif
Other DBs
NCBI-GeneID:
103043388
NCBI-ProteinID:
XP_049342194
Ensembl:
ENSAMXG00000036289
LinkDB
All DBs
Position
12:complement(131658..165828)
Genome browser
AA seq
1683 aa
AA seq
DB search
MAQILPIRFQEHLQLQTLGVNPANIGFSCLTMESDRFICIREKVGDQNQVVIIDLSDPSN
PIRRPITADSAIMNPASKVIALKAARTLQIFNMEMKSKVKAHTAADEVMYWKWISVNTIA
LVTDTAVYHWGMEGDSQPIKMFDRHASLAGCQIINYRTDEAQKWLLLIGISAQQNRVVGA
MQLYSVERKVSQPIEGHAAAFTQYKLEGNQNSSTLFCFAVRNQAGGKLHIIEVGQPVAGN
QPFAKKAVDVFFPPEAQTDFPVAMQIGTKHGVIYLITKYGYIHLYDLESGVCIYMNRISA
ETIFVTAAHESTSGIIGVNKKGQVLSVCVEEENIVNYSTSVLQNPELGLRLAVRSDLPGA
EELFTHKFNTLFSQSRFTEAAKVAASAPKGVLRTAETIRRFQCAVVSGGQASPLLQYFGV
LLDQGQLNKLESVELCRPVLQQGRTQLLEKWLKAEKLECSEDLGDLLKAADPNLALSVYL
RANVPPKVIQCFAETGQYQKIVLYAKKVDYSPDWMVLLRSVLRSGADQGLQFAQMLIQDE
EPLADINQVVDVFMEGNLVQQCTSFLLDALKNNRPEEGPLQTRLLEMNLLHAPQVADAIL
GNQMFSQYDGGRVAELCERAGLLQRALEHFTHLHDIKRTIVHTHLLNPEWLVNYFGSLSV
GDSLECLRAMLSANLRQNLQLSVQIASKYHEQLSTAALVELFESFKSYEGLFYFLGSIVN
FSQDLEVHFKYIQAACKTGQIKEVERICRESSCYDPERVKNFLKEAKLTDQLPLIIVCDR
FDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRLPVVVGGLLDVDCSEEVMKSLILGVRGNF
STDLLVEEVEKRNRLKLLSSWLETRVQEGSEEPATHNALAKIYIDSNNNAERFLRENPHY
DSATVGRYCEKRDPHLAFVAYERGECDLELIKVCNENSLYKSEARYLVRRKDADLWAAVL
EESNPYRRALIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLENSIFSE
HRNLQNLLILTAIKADRTRVMEYINRLENYDAPDIANIAISNQLYEEAFCIFKKFDVNAS
AIQVLIEQVGDLDRAYEFAECCGEGAVWSQLAGAQLQQNLVKEAIDSYIRADEPAAYMEV
VDAASRNNNWEDLVRFLQMARKKARESYVETELLFALAKTKRLSELEEFINGPNNAHIQQ
VGDRCFEEGMFEAARLLFNNVSNFARLASTLVNLCEYQAAVDSARKANSTRTWKEVCFAC
VDGEEFRLAQICGLHIVIHADELEELISYYQDGGYFEELVTLLEAALGLERAHMGMFTEL
AILYSKYKRQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEFDNAVITMIT
HPTHAWRHSPFKEIISKVVNVELYYKSLQFYLEYKPLLLNDLLTVLTPRLDHSRAVTFFT
KVNQVRLVKPYLRSVQNQNNRAVNEALNSLLTEEEDFQGLRSSIEVYDNFDSISLAESLE
QHELIEFRRIAAYLYKLNQRWTQSIQLCKRDHLYKDAMQFAAESKDGDQAQDLLRWFLQE
GRRECFAACLFSSYDLLAPDVVLEMAWRHGLIDFALPYFTQVMREYLTKVDELAGQVKVD
NLEESEGKRSSEKVSEESSSVDYGQQLMLAAGQSPVAPQAVFSSYGFTAAGFSSPAYGFN
LHP
NT seq
5052 nt
NT seq
+upstream
nt +downstream
nt
atggcgcagattttacccatccgcttccaggagcatctgcagctgcagactctgggggtg
aacccggcgaatatcggcttcagctgtttgacgatggagtcggatcgcttcatttgcata
cgggagaaggtgggcgatcagaaccaggtggtgatcatcgacctcagcgacccctccaac
cccatccgccgaccaatcacagctgacagtgccatcatgaacccggccagtaaggtcatc
gctctgaaagcggcgcggacgctgcagatctttaatatggagatgaagagtaaggtgaaa
gctcacaccgctgcagacgaggtgatgtactggaagtggatctctgtgaacaccatcgcc
ctggtcaccgacaccgccgtctaccattgggggatggagggagactctcagccaatcaag
atgttcgaccggcatgccagcctcgcgggttgccagattatcaactacaggacagatgaa
gctcagaaatggcttctgcttataggaatatcagcacagcagaaccgtgtggtcggggcg
atgcagttgtattctgtagagaggaaagtgtctcagcctatagagggtcacgcggccgcg
tttactcaatacaaactggagggaaaccagaattcatccacacttttctgcttcgccgtc
agaaaccaggctggagggaagcttcatataatagaggtgggtcagccggtcgcggggaat
cagccgtttgctaagaaagctgtagacgtgtttttcccccccgaggctcagactgatttc
cccgtggccatgcagatcggtacgaagcacggcgtgatctacctcatcactaaatacggc
tacatccacctgtatgatctggagtcaggtgtgtgtatttatatgaatcgaatcagtgca
gaaactatcttcgtcacagcggcacacgagagcacgtccgggattataggagtgaacaag
aagggacaggttctctcagtgtgtgttgaggaggagaacatagtgaactacagcactagt
gttctgcagaatccggagctgggtctgaggctggcggtgcgcagtgatctgccgggagcg
gaggagctcttcacacacaagtttaacacactcttctctcagagcagattcaccgaggcg
gctaaagtcgctgcttcagctccgaagggagttctgaggacggcggagacgattaggagg
tttcagtgtgcggtggtgtcggggggacaggcgtctccgctgctgcagtatttcggggtg
ctgctggatcagggtcagctgaataagctggagtcggttgagctgtgccggccggtgctg
cagcagggccgcacgcagctgctggagaaatggctgaaggctgagaagttggagtgttcg
gaggatttgggggatctgctaaaagcagcagatccgaatctcgcgctcagcgtttacctc
cgagcaaacgtcccgcccaaagtcatccagtgcttcgcagagacgggacagtaccagaaa
atcgtcctgtacgctaaaaaagtggattatagtccagactggatggtgttgttgaggagt
gtgttgcgctctggagctgatcaggggctgcagttcgctcagatgctgattcaggatgag
gagcctctcgccgacattaatcaggtggtagacgtttttatggagggtaatttagtgcag
cagtgtacctccttcctattggacgctctgaagaacaaccggccggaggaggggcctctg
cagacacgcctcctggagatgaatctccttcacgcccctcaggtagcagatgctattctg
ggtaatcagatgttcagtcagtatgatgggggtcgtgtagcggagctgtgtgagagggcg
gggttactgcagcgagcgctggagcatttcacccacctccacgacatcaaacgcaccatc
gttcacactcacctgctcaaccccgagtggttggtgaattatttcggctcgttgtcggtg
ggagactctctggagtgtttgagggcgatgttatccgctaatctcagacagaacctgcag
ctgagcgtccagatcgcctccaaataccacgagcagctgagcaccgcggctctggtggag
ctgtttgagtcctttaagagctacgagggtctgttttatttcctgggctccatcgtgaac
ttcagtcaggacctggaggtgcactttaaatacatccaggctgcgtgtaaaaccggacag
attaaagaggtggagcgaatctgcagagagagcagctgctacgaccccgagcgcgtcaaa
aacttcctgaaggaggcgaagctgacggatcagttaccgctgattatcgtctgcgatcga
tttgatttcgtgcacgatctggtgctttacctgtaccgaaacaacctgcagaaatatatc
gagatctacgtccagaaggtgaacccgagccggttgccggtggtggtgggggggctgttg
gatgtggattgttcggaggaggtgatgaagagtctgattttgggggtgaggggaaacttc
agcaccgacctgctggtggaggaggtggagaagaggaacaggctgaagctcttgtcctcg
tggttggagactcgggttcaggagggcagcgaggaaccggctacccataatgcactggct
aaaatctacatcgacagtaacaataacgccgagcgcttcctccgggagaacccgcactac
gacagcgccaccgtggggcgctactgcgagaagagagaccctcacctggccttcgtagcg
tacgagagaggagagtgtgacctggagctcatcaaggtgtgtaatgagaactctctgtat
aagagtgaggctcggtatctggtccggaggaaggatgctgatctgtgggcggcggttctg
gaggagagtaatccatacagacgagctcttattgatcaggtggttcagacagctctctct
gagacgcaggatccggaggaagtttcagtaacagttaaagcgtttatgaccgcagatctt
cccaacgagctgatcgaactgctggagaaaatcgtgctggagaattccatattcagtgaa
cacaggaatctgcagaatctgttgattctgacggctattaaagcggatcgaacgcgagtg
atggagtacatcaaccgattagagaattacgatgctcctgacatcgcaaacatcgccatc
agtaaccagctgtacgaggaggcgttctgcatcttcaagaagttcgacgtgaacgcttct
gctatacaggttctgatcgagcaggtgggggatctggaccgggcgtatgagtttgcggag
tgctgtggggagggggcagtgtggagtcagttggctggagctcagctgcagcagaatctg
gtgaaggaggcgatcgactcgtacatccgagcggacgagccggcggcgtatatggaggtg
gtggacgccgccagccggaacaataactgggaggatctggtgaggtttctgcagatggcg
cgaaagaaagcgcgagagtcttacgtagaaactgagctcctgtttgctctcgctaaaacc
aaacgtctctctgagctggaggaatttatcaacggcccgaacaacgcacatatacagcag
gttggggatcgttgttttgaggagggcatgtttgaggcggccaggctgctgtttaataac
gtgtctaatttcgcacgcttggcgtcgacgctggtgaacctgtgcgagtaccaggcggcg
gtggacagcgcccgcaaagccaactccacccgcacctggaaagaggtgtgttttgcgtgt
gtagatggagaagagttccgattggctcagatttgtggtctgcacatcgtgattcacgct
gatgagttagaggagctgatcagctactatcaggatggagggtattttgaggagctggtt
actctgctggaggcggcgctgggtttggagagagctcatatggggatgttcactgaactc
gcgattctttactctaaatataaacggcagaagatgagagaacatctggagctcttctgg
tccagagtcaacatccccaaggtgcttcgtgcagcagagcaggctcacctgtgggcggag
cttgtgttcctgtatgataaatatgaagagtttgataacgcagtaatcaccatgatcaca
cacccgacccacgcctggagacactccccctttaaagagatcatcagcaaggtggtgaat
gtggagttatattataaatcactgcagttttatttagagtataaacctctgctgctcaac
gacctgctgactgttctcacacccagactcgaccacagcagagccgttaccttcttcacc
aaggtgaatcaggtgaggctggtgaagccgtatctgagatcagtacagaaccagaataac
agagccgttaatgaagctttaaacagcttactgaccgaggaggaggacttccagggtctt
cgctcctctatagaagtgtatgataacttcgactccatcagtttggctgagagtctggag
cagcacgagctgatcgagttcagacgcatcgccgcttatctctacaaactcaaccagcgc
tggacccagagcatccagctctgcaagagagaccacctgtacaaggatgcgatgcagttc
gctgcggagtcgaaggacggggatcaggcgcaggatttgctgcgctggtttctgcaggag
ggacgcagggagtgttttgctgcttgtcttttctcctcgtatgatcttctggctccggac
gtggttttagaaatggcctggagacacggcctcatcgacttcgccctgccgtacttcacc
caggttatgagagaatacctcaccaaggtggatgaattagcgggacaggtgaaggtggat
aatctagaagagtctgaaggtaaacgaagctctgagaaagtgagtgaagagtccagttct
gtagattacggtcagcagttgatgttagctgctggtcagtctcctgtagctcctcaggct
gtgttctccagttacggctttactgctgctggattctcctctccagcctacgggtttaac
ctccacccctga
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integrated database retrieval system
