KEGG   Astyanax mexicanus (Mexican tetra): 103043406
Entry
103043406         CDS       T05042                                 
Symbol
smu1a
Name
(RefSeq) WD40 repeat-containing protein SMU1
  KO
K13111  WD40 repeat-containing protein SMU1
Organism
amex  Astyanax mexicanus (Mexican tetra)
Brite
KEGG Orthology (KO) [BR:amex00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:amex03041]
    103043406 (smu1a)
Spliceosome [BR:amex03041]
 Complex B
  Other components
   Complex B specific factors
    103043406 (smu1a)
SSDB
Motif
Pfam: Beta-prop_WDR5 Beta-prop_THOC3 WD40 Beta-prop_IFT122_1st Beta-prop_WDR3_1st WD40_WDHD1_1st WD40_Prp19 Beta-prop_TEP1_2nd Beta-prop_EML_2 Beta-prop_WDR36-Utp21_2nd WD40_CDC20-Fz Beta-prop_WDR3_2nd WDR55 WD40_MABP1-WDR62_2nd EIF3I Beta-prop_CAF1B_HIR1 Beta-prop_WDR36-Utp21_1st ANAPC4_WD40 WD40_Gbeta Beta-prop_EML LisH_TPL Beta-prop_WDR90_POC16_2nd Beta-prop_VPS8 Beta-prop_WDR75_1st Beta-prop_RIG_2nd NBCH_WD40 Beta-prop_ACSF4 WDR90_beta-prop_4th CFAP251_N Beta-prop_Nup120_160 Ge1_WD40 Beta-prop_Aladin Beta-prop_TEP1_C Beta-prop_NOL10_N WD40_MABP1-WDR62_1st Beta-prop_NWD2_C Beta-prop_Vps41 Beta-prop_WDR41 Beta-prop_DCAF4 Beta-prop_NUP159_NUP214 TRM82_WD ASA1 DSE1_N Beta-prop_HPS5 Beta-prop_SPT8 Beta-prop_IFT140_1st Beta-prop_EIPR1 Beta-prop_WDR19_1st Beta-prop_WDR35_TULP_N Beta-prop_SCAP Beta-prop_WDR75_2nd Beta-prop_BBS7 WD40_RFWD3 Beta-prop_IP5PC_F LisH_UCP007778 PAC11 DUF7165 LisH LisH_PAC1 PROPPIN WD_LRWD1 LisH_WDR26 TPP1 zf_topless LisH_SSDP
Other DBs
NCBI-GeneID: 103043406
NCBI-ProteinID: XP_007228099
Ensembl: ENSAMXG00000016391
UniProt: A0A8B9H6A3
LinkDB
Position
2:complement(64897830..64906031)
AA seq 513 aa
MSLEIESADVIRLIMQYLKENNLHRTLATLQEETTVSLNTVDSIESFVADINSGHWDTVL
QAIQSLKLPDKTLIDLYEQVVLELIELRELGAARSLLRQTDPMIMLKQTQPERYIHLENL
LARSYFDPREAYPDGSSKEKRRAAIAQALAGEVSVVPPSRLMALLGQSLKWQQHQGLLPP
GMTIDLFRGKAAVKDVEEERFPTQLSRHIKFGQKSHVECSRFSPDGQYLVTGSVDGFIEV
WNFTTGKIRKDLKYQAQDNFMMMDDAVLCMCFSRDTEMLATGAQDGKIKVWKIQSGQCLR
RFERAHSKGVTCVSFSKDSSQLLSASFDQTIRVHGLKSGKSLKEFRGHSSFVNEATFTPD
GHHIISASSDGTVKIWNVKTTECTSTFKSLGASAGTDITVNNVILLPKNPEHFVVCNRSN
TVVIMNMQGQIVRSFSSGKREGGDFVCCTLSPRGEWIYCVGEDFVLYCFSTVTGKLERTL
TVHEKDVIGIAHHPHQNLISTYSEDGLLKLWKP
NT seq 1542 nt   +upstreamnt  +downstreamnt
atgtctttggagatcgagtcagcagacgtaatccgtctgatcatgcagtacttaaaggaa
aataacctgcatcgcacactggcaacactgcaggaggagaccaccgtatccctcaacaca
gtggacagtattgaaagttttgtggctgacattaacagcggtcactgggacactgtacta
caggctatccagtccctcaagctgccagacaagaccctgattgatctgtatgaacaggtt
gtgctggagctgattgagctgagagaattgggagctgccaggtctttgctgagacaaact
gaccccatgattatgctgaaacagactcagcctgagaggtacattcacctggagaacctg
ctggcccgctcctacttcgaccccagagaggcttaccctgatggcagcagtaaggaaaag
cgccgagcagccattgcccaggcgttggctggcgaggtcagtgtggtgcctccttcacgt
ctcatggctctgcttggacagtctctgaagtggcagcagcaccagggtcttctgcctcct
ggtatgactatcgacttgttcagaggcaaagctgcagtgaaggatgtagaggaagagcga
ttccccacccagctgagcagacacatcaagtttggtcagaagtctcacgtggagtgctcc
cgcttctctccggatggtcagtatttggtcactggctctgttgatggcttcattgaggtg
tggaacttcaccacaggcaagatcagaaaggatctgaagtaccaggcgcaggataatttt
atgatgatggacgacgctgtgctgtgcatgtgttttagcagagatacagagatgctggct
acaggagctcaggatggcaaaataaaggtgtggaagatccagagtggtcagtgtctgcgc
cggtttgagcgtgctcacagtaaaggtgtgacctgtgtgagcttctccaaagacagcagt
caacttctttcagcctcgtttgaccaaacaatcagagttcatgggctaaaatcaggcaag
tctctgaaggagttccgaggccactcttcattcgttaatgaagccacattcactcctgat
ggccaccatattatcagtgcttcttctgatggcacggtgaagatttggaacgtgaaaacc
acagagtgcacaagcacatttaaatctctcggcgcctcagctggcacggacattactgtg
aacaacgtcatcctccttcccaagaacccagagcattttgtagtctgtaaccgctccaac
actgtggtcattatgaacatgcagggccagattgtgaggagtttcagctctggtaagcga
gaggggggagatttcgtatgctgcacactttcccccagaggagagtggatctactgcgtg
ggagaggacttcgtgctctactgcttcagcacagtcactggcaaactggagagaaccctg
acagtacacgagaaggatgtgattggtattgcccaccaccctcatcagaacttgatctct
acatatagtgaagatggtcttctcaagctttggaaaccttaa

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