Astyanax mexicanus (Mexican tetra): 103043589
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Entry
103043589 CDS
T05042
Symbol
scarf1
Name
(RefSeq) scavenger receptor class F member 1
KO
K24318
scavenger receptor class F member 1
Organism
amex
Astyanax mexicanus (Mexican tetra)
Pathway
amex04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
amex00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
103043589 (scarf1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
amex04131
]
103043589 (scarf1)
Membrane trafficking [BR:
amex04131
]
Endocytosis
Phagocytosis
Scavenger receptors
103043589 (scarf1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EGF_laminin
EGF_TEN
EGF_2
EGF_Teneurin
Motif
Other DBs
NCBI-GeneID:
103043589
NCBI-ProteinID:
XP_007260941
UniProt:
A0A8T2L1E2
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Position
18:24595915..24606681
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AA seq
888 aa
AA seq
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MEQLGRVLTCLGLLLLCSLASAQKLSPTGKNVCLSPRDSSLVCCSGWAQQGEECTIPLCE
GERSCTQDEVCAFPGVCRCKPGFFGFQCKTRCPPEFWGSDCRELCRCHPHGHCDAATGKC
TCLPTRWGNLCQNNCKCSRHGRCDPVYGNCTCEEGWWTSTCSKACQCHQGTSTCDQTTGR
CLCKVGYYGLKCSLPCNCNLSPCLQQSGDCQCVKGWWGRNCDRRCICDLSHGDCEQYSGE
CQCEAGYKRPFCRETCSAGFYGRGCTESCGKCEGGKPCSKLDGACDGCAPGWNGTLCDQP
CPPGYYGKLCQNVCPRCRRGEPCHIETGECSHCDPGWTGPRCSQPCPEGTFGDSCRFLCS
PCYHGRCDHVTGNCVCHSGFQGVRCNSSCPDRLYGINCSLACDCGDDVCHPATGACPYSS
RAALLTGLLIPLLLIILALLFCCCCCGSPADGKHRVAVGDGSTTGRMKHHVYTVLANMSA
AMPCLTFWSSGLPRVTVSHHDPELTFNHSFIEPPSSGWVTDSFETDEDGEALYCLPPRED
IPAVAGGEFQELSSKCNVFPDPSAFSTEDMSLAFGIPRTSSIAKSKRPSVSFAEGTKFSP
KERRGSGQELPANARKPKSPWGVLMLSALQGGNQGQVEGEKEEGTDEGNASTEDQESGLP
PEASETEPALRTHLTVPGSRRRTLSNTKKHLQPQASSDGQEADKEADKVTTVYMTVGKAA
HVVKSESSSEGPVQAMLRRLGSLQRQREEANRPKGKNPAVTKPPRRKLGARASVWEQAAG
GSTSEVVMKKPSRKKRNSAGETETPRENSATKRPLSSSLMSVPESPLRESRVSTDPSATS
EQDTQLDAGYETVAPSEEASTQSEVIINETLAVQEDGPNYENVYIYPS
NT seq
2667 nt
NT seq
+upstream
nt +downstream
nt
atggagcagctggggagggtcctgacctgcctgggactgctcctcctctgctctctggcc
tccgctcaaaagctctcgcccacagggaagaatgtctgcctcagccccagggactcttct
cttgtgtgttgttctggatgggcccagcagggtgaagagtgcactataccactctgtgag
ggtgagagatcctgcacacaggacgaggtgtgtgcatttccaggagtatgcagatgcaaa
cctggcttctttgggttccagtgtaagactcgctgtccaccggagttctggggctctgac
tgtcgcgagctctgtcggtgccaccctcacggacactgtgatgctgctacgggcaagtgc
acctgcctacccacccgctggggcaacctgtgccagaacaattgtaaatgcagtcgccac
gggcgctgtgatccagtatatggaaactgtacctgtgaagagggctggtggacgtccacc
tgcagtaaggcctgccagtgccaccagggcacatccacctgcgaccagaccacggggcgc
tgcctctgtaaagtaggctactatgggctaaagtgcagtctaccctgcaactgcaacctc
tcgccctgcctgcagcaatcaggggactgccagtgtgtgaagggctggtggggaaggaac
tgtgaccgccgctgcatctgtgacctcagccacggagactgtgaacagtactcaggagag
tgtcagtgtgaggcaggctacaagcggcccttttgtcgcgagacctgcagtgcaggcttc
tatgggagaggctgtacagagagctgtggaaaatgtgagggtggtaaaccatgttcgaag
ctggatggcgcttgtgatggctgcgccccaggatggaacggcacactctgcgaccagccc
tgccctccgggatactatggcaagctctgccagaatgtgtgccctcgctgcaggagggga
gagccatgccacatcgaaacaggagagtgctcacactgtgacccaggctggactggacca
aggtgtagccagccatgccctgagggtacctttggggacagttgtcgcttcctctgcagt
ccctgctatcacggccgctgtgaccacgtgacaggaaattgtgtctgccactctggcttt
cagggtgtgaggtgcaacagttcttgtcctgatcgcctgtatggaataaactgttccttg
gcttgtgattgtggagatgatgtgtgccatcctgcaaccggtgcctgtccatacagcagt
cgtgcagcacttctcacagggcttctgattccgctgctgcttattatcctcgctttactg
ttctgttgttgctgttgtggaagtccagctgatggaaagcacagggtggcagtaggggat
gggagcacgaccggccgcatgaagcatcatgtctacacagtgctagctaacatgagcgca
gccatgccgtgcctcaccttctggtcctctgggctgcccagggttacagtgtctcatcat
gatccggagctcacctttaaccacagctttattgagcctccttcctctggctgggtcact
gactcctttgagactgatgaggatggagaggcactgtactgtctcccacccagagaagac
atcccagctgtggctggaggtgagttccaggagctgagctcgaagtgcaacgtctttcct
gacccgtctgcgttcagcactgaggacatgtctctggcgtttggcattccccgcacctcc
agcatcgccaagtccaagcggccttccgtctccttcgctgagggcaccaagttcagccct
aaggagcggcgaggctcaggccaggagctgcctgctaatgcacggaagcctaaatccccc
tggggagtgctgatgctctctgcgctgcaggggggaaaccaagggcaggtggaaggagag
aaggaagagggcacagatgagggtaatgcatctacagaggaccaagagtctggtttacca
cctgaggcttcggaaacagagccagccttaaggactcatctgactgttccgggcagcaga
cggcgcaccctctccaacaccaagaaacacctccagccacaggcctcctctgatggccag
gaggcagataaagaggcagataaagtgaccactgtctacatgactgtaggcaaggctgct
catgtcgtaaagtcagagagcagttctgaagggccagtgcaggccatgctacgcagacta
ggtagtctccaaagacaacgtgaggaagcaaaccggcctaaaggtaaaaacccagccgtg
acaaaaccccctcgcaggaaactaggggcacgggccagtgtttgggagcaggctgccggg
ggaagcacatctgaggtggtcatgaaaaagcccagtcgcaagaaacgcaactcagcgggg
gaaacagaaaccccacgtgagaacagcgccaccaagaggcccctgtcctccagtctcatg
agtgttcctgaaagccccttgcgagagtcacgggtgagcacggacccaagtgcaacttct
gaacaagacacacagttagatgcaggttatgagacagtggctccatctgaagaggcctcc
actcaatcagaggtcattattaatgagactctggcagtgcaggaggacggacccaattac
gagaatgtgtatatatatccttcttga
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