KEGG   Astyanax mexicanus (Mexican tetra): 103043631
Entry
103043631         CDS       T05042                                 
Symbol
sec13
Name
(RefSeq) protein SEC13 homolog
  KO
K14004  protein transport protein SEC13
Organism
amex  Astyanax mexicanus (Mexican tetra)
Pathway
amex03013  Nucleocytoplasmic transport
amex04141  Protein processing in endoplasmic reticulum
amex04150  mTOR signaling pathway
Brite
KEGG Orthology (KO) [BR:amex00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    103043631 (sec13)
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    103043631 (sec13)
 09130 Environmental Information Processing
  09132 Signal transduction
   04150 mTOR signaling pathway
    103043631 (sec13)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:amex03019]
    103043631 (sec13)
   04131 Membrane trafficking [BR:amex04131]
    103043631 (sec13)
Messenger RNA biogenesis [BR:amex03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Nuclear pore complex
     103043631 (sec13)
Membrane trafficking [BR:amex04131]
 Protein recycling
  Rab GTPases and associated proteins
   Rab11 associated proteins
    103043631 (sec13)
 Endoplasmic reticulum (ER) - Golgi transport
  Forward pathways
   Coat protein complex II (COP-II)
    103043631 (sec13)
 Autophagy
  Other autophagy associated proteins
   SEACAT/GATOR2 complex
    103043631 (sec13)
SSDB
Motif
Pfam: Beta-prop_THOC3 WD40 Beta-prop_WDR5 WD40_Prp19 Beta-prop_WDR3_1st WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_EML_2 Beta-prop_CAF1B_HIR1 Beta-prop_WDR3_2nd Beta-prop_TEP1_2nd EIF3I WD40_Gbeta Beta-prop_RIG_2nd ANAPC4_WD40 WD40_MABP1-WDR62_2nd WDR55 Beta-prop_WDR90_POC16_2nd Beta-prop_Vps41 Beta-prop_EIPR1 Beta-prop_WDR41 Beta-prop_EML Beta-prop_WDR36-Utp21_1st NBCH_WD40 Beta-prop_WDR36-Utp21_2nd
Other DBs
NCBI-GeneID: 103043631
NCBI-ProteinID: XP_007251556
Ensembl: ENSAMXG00000004356
UniProt: A0A8B9JUZ0
LinkDB
Position
24:complement(1052893..1062371)
AA seq 320 aa
MVSVINTVDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVKNGGQILVADLRGHEGPV
WQVAWAHPTYGNILASCSYDRKVIIWKEENGTWDKMYKYTGHNSSVNSICWGPYEFGLTL
ACGSSDGAISILTYTGDGQWDIKKINNAHTIGCNAVSWAPAVVPGSLIDQPTGQKPLYIK
RFVSGGCDNLVKLWKEEDGQWKEDQKLEAHSDWVRDVGWAPSIGLTTSTIASCSQDGRVF
IWTCDDPSGNTWTAKLLHKFSDVVWHVSWSITGNILAVSGGDNKVTLWKESVDGQWSCIS
DVNKSQGGLSSITDTQQNEQ
NT seq 963 nt   +upstreamnt  +downstreamnt
atggtgtctgtaattaatacagtggatacctcacacgaggacatgatccatgatgcccag
atggactactatggcacacgactggcgacctgctcctctgatcgctctgtgaagatcttt
gatgtaaagaatggaggacagattcttgtggctgatttgagggggcatgaaggtccagtg
tggcaggtagcctgggctcatccaacctacggcaacatcctggcctcctgttcctatgac
cgaaaagtcattatctggaaagaggagaacgggacatgggataagatgtacaaatacaca
ggccacaactcctcagtgaactctatctgctgggggccgtatgagtttggtttgactctg
gcttgtggaagctctgatggcgcgatttcaattctgacctacaccggtgacggacagtgg
gacattaagaagattaataatgcacacactattggctgtaatgcagtgagctgggctcca
gccgtggttccaggaagtcttatagaccagcccacaggacagaaacccctctacatcaag
agattcgtctccgggggctgcgacaacttagtcaagctgtggaaagaagaggacggccaa
tggaaggaggaccagaaacttgaagctcacagtgattgggtgagagatgtaggctgggct
ccatctattggactgaccaccagcacaatcgccagctgctcacaggacggtagggtgttt
atctggacgtgtgacgatccctccggaaacacctggaccgctaaactcctgcacaaattc
agcgacgtggtctggcacgtgagctggtccatcaccgggaacatcctggcagtatctgga
ggagacaacaaggtgacgctgtggaaggagtcggtggacggacagtggtcctgcatcagt
gacgtcaataagagccaggggggcttgtcctccatcacagacacccagcagaacgagcag
tga

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