Astyanax mexicanus (Mexican tetra): 103044004
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Entry
103044004 CDS
T05042
Symbol
lingo1b
Name
(RefSeq) leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein 1-B isoform X1
KO
K23533
leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein
Organism
amex
Astyanax mexicanus (Mexican tetra)
Brite
KEGG Orthology (KO) [BR:
amex00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
amex04131
]
103044004 (lingo1b)
Membrane trafficking [BR:
amex04131
]
Endocytosis
Lipid raft mediated endocytosis
RhoA-dependent endocytosis
103044004 (lingo1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_8
LRR_4
LRR_5
I-set
Ig_3
ig
Ig_2
LRRNT
LRR_9
LRR_EndoS
LRR_6
LRR_RPS2
V-set
LRR_Zer-1
LRR_LRWD1
C2-set_3
Motif
Other DBs
NCBI-GeneID:
103044004
NCBI-ProteinID:
XP_022520983
Ensembl:
ENSAMXG00000032291
UniProt:
A0A3B1JK79
LinkDB
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Position
23:complement(1733842..1774054)
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AA seq
622 aa
AA seq
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MTFLQVTSRMVAGEASGHSYLVACWQPILILMLGTVLSGSATGCPSRCECSAQERSVQCH
RRKLITLPEGIPIETRLLDLSKNRLKAINPEEFINYPHLEELQLNENVISVIEPGAFSNL
FGLRTLGLRNNKLKLIQLGVFTGLSNLTRLDISENKIVILLDYVFQDLYNLKELEVGDHD
LVFISSRAFHGLTSLEQLTMERCNLTTVPTDALSHLHNLLVLKLWNFNVNVIKDYSFRRL
YRLKVLEVAGWPFLEALTDKSLHGLNITTLSVTNCNLTAVPYVAIQHLGHLRSLNLSFNP
IETVEGNKMHNLMRLQVFDLVGGRLATIEPYSFRGLNYLKVLNVSNNRLSTLEESVFHSV
GNLETLGLYSNRLACDCRLRWVFRRRLRLNFNKQQPSCETPEFVQGQEFKDFSDNLPANL
FVCQPSKILDHKALHRFVDEGTTVNFVCKAEGDPAPVIMWQNPKKQFITVKSVGRLSVSQ
DGTLEVRYAQIQDNGTYTCIATNAGGNDTKLAHLHVHSYSPNWPHQPNKTFAFISNLPND
SGANGTGRSVPFPFDMKTLIIATTMGFISFLGVVLFCLVLLFLWSRGKGNAKPNIEIEYV
PRKVDGETSPTEESHKIRMKMM
NT seq
1869 nt
NT seq
+upstream
nt +downstream
nt
atgacgtttctgcaggtaaccagcagaatggtggctggcgaggcgagtgggcacagctac
ttggtggcatgctggcagccaatcctcatcctgatgctgggcacagtgctgtcgggatcc
gccaccggatgcccgtcccgctgcgagtgcagcgctcaggagcgctcggttcagtgccac
cgcaggaagctgataacccttcccgaaggaatacccatcgagacgcgactgttggacctg
agcaaaaaccgcctgaaagccatcaaccccgaggagttcatcaactaccctcacctggag
gagctgcagctcaatgagaacgttatctcggtcattgaacccggcgccttcagcaacctc
ttcggcttacggacgttgggactgcgcaacaacaagctgaagctcattcagctgggcgtg
ttcaccggcttgagcaacctcacgagactggatatcagtgagaacaaaatagtcatcctg
ctggactacgtgtttcaggacctttacaacctaaaggagctggaggtgggcgatcacgac
ctggtcttcatttccagcagagccttccacggcctcaccagtctagagcagctcaccatg
gagaggtgcaatctgaccaccgtgcccacggacgctttgagccatcttcacaatttgctg
gtactcaagctgtggaatttcaatgtaaacgtcattaaggactactccttcaggagactg
tatcgcctgaaggtgctggaggtcgccggttggccctttcttgaagccttgaccgacaag
tctcttcacgggctcaacattacaaccttgagcgtcacaaactgcaacctcactgccgtt
ccgtacgtggccatccagcaccttgggcaccttcgctctctcaacctgtccttcaatccc
attgagactgtggagggcaacaaaatgcacaatttgatgaggctccaggtgtttgacctg
gtaggcggtcgattggccactattgagccttactctttcagaggactcaactaccttaaa
gttctcaacgtatccaacaacagactgagcactttagaggagtccgtctttcattccgtg
ggaaacctggagaccctgggcttgtacagcaatcgattggcctgcgattgccgcctgcga
tgggtctttcggcgccgcttgaggctcaacttcaacaagcagcagccgtcatgtgagacg
cctgagttcgttcaggggcaggagtttaaagacttctctgacaatctccccgccaacctc
ttcgtttgccagccatctaagatactggaccacaaggctctacatagatttgtggacgag
ggaactacggttaatttcgtgtgcaaggcggagggggatccggcccctgtgatcatgtgg
cagaacccgaagaagcaattcatcaccgtcaaaagtgttggacgtctctctgtgtctcag
gacggcactctggaagtgcgctacgcccaaatccaagacaatggcacttacacgtgtata
gctaccaatgcagggggtaatgacaccaaacttgcccatttacacgttcatagttactct
ccaaactggcctcatcagcctaacaagacgtttgccttcatttccaacctgcccaatgac
agtggtgccaatgggactggtaggtcagtcccgtttccatttgatatgaagactctaatc
attgcaactaccatgggatttatctcttttctcggagtggtgctgttttgtcttgttctg
ctcttcctctggagccgggggaagggtaatgccaagccaaacatcgagattgaatatgtg
ccacggaaagtagacggggagaccagtccaactgaggaatcccataagatcagaatgaaa
atgatgtaa
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