Astyanax mexicanus (Mexican tetra): 103044029
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Entry
103044029 CDS
T05042
Symbol
abca1b
Name
(RefSeq) phospholipid-transporting ATPase ABCA1b isoform X1
KO
K05641
ATP-binding cassette, subfamily A (ABC1), member 1
Organism
amex
Astyanax mexicanus (Mexican tetra)
Pathway
amex02010
ABC transporters
amex04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
amex00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
103044029 (abca1b)
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
103044029 (abca1b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
amex02000
]
103044029 (abca1b)
Transporters [BR:
amex02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA1, 2, 3, 4, 7, 12, 13 subgroups
103044029 (abca1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
ABC2_membrane_3
R1_ABCA1
AAA_21
SRP54
DUF4162
AAA_23
Motif
Other DBs
NCBI-GeneID:
103044029
NCBI-ProteinID:
XP_022527820
Ensembl:
ENSAMXG00000016432
LinkDB
All DBs
Position
2:complement(64739664..64786870)
Genome browser
AA seq
2293 aa
AA seq
DB search
MSISTQLRLLLWKNFTYRRRQTLQLLIEIVWPLFIFFILIAVRLNYPPYEQHECHFPNKA
MPSAGTLPWIQGIVCNANNPCFRHPTPGESPGVVGNFNDSIISRLFSDAKKILLYSQNDK
SLDGFKELIHAVKALQNNTSGFKLKDFLNDNETLSTFLIQNASFSENYVQDILKADVNLE
KVLTKGFGVHLRDMCNTTLLEDFVNITNKKVAKLTQESICSSSKTWLNQAERHFMANLDF
FKPLRDAKKISKSRSDSRPETREARKVAKAADNLLENLGSLAVELASMRSWSDLRNEILF
LTRNATGSPSQMYQAVSRIVCGHPEGGGLKIKSLNWYEDSNYKALFGNYNSSDEEPVSVY
DNTSTPFCNNLMKNMETNPISRMIWRALKPLLMGKILYTPHTPATHKIIKEVNRTFQELG
VLRDLGGMWEETRPKAWNFMEHSEEMDLLRTLLQNNVTAAFFSAQLTGTQWSVQDVISFL
TKQSEDTRPHGTAFTWRDVFNETDQAIMSISRFMECVNLDKLEPVSTEEKLINDSLGLLD
NRKFWAGIIFPDIQSNSSELPPHVNYKIRMDIDNVERTNKIKDAYWDPGPRADPFEDLRY
VWGGFSYLQDVIEQSIIRAVTGTKEKTGVYIQQMPYPCYVDDIFLRVMSRSMPLFMTLAW
MYSVAIIIKGVVYEKEARLKETMRIMGLDNGILWFSWFISSLIPLLMSAGLLVLLLKMGN
LLPYSDPGVVFLFLGSFAVVTIMQCFLISTVFARANLAAACGGIIYFTLYLPYVLCVAWQ
DYIGLPAKVIASLLSPVAFGFGCEYFALFEEQGVGIQWKNLFSSPMEKDDYSLTTSIIIM
YVDAFIYGVMTWYIEAVFPGQYGIPRPWYFPFTKSYWFGEGDQRPTPILKGRKANSGAVC
IEEEPTHLDMGVYIENLVKVYRHGKKLAVDDLTLGFYEGQITSFLGHNGAGKTTTMSILT
GLFPPTSGTAYIMGKDIRSELSAIRQSLGVCPQHNVLFSMLTVEEHVWFYARLKGLSEEE
VKAEIDQILYDTGLPHKRKSRTCELSGGMQRKLSVALAFVGGSKVVILDEPTAGVDPYAR
RGIWDLLLKYRTGRTIILSTHHMDEADILGDRIAIISHGKLCCVGSSLFLKTHLGTGYYL
TLVKKEPEASLSSCRNSSSTVSYVKKDDEASESSSDAGLGSDHESDAATAIGSSWTDSPI
VPADISLISGLIIKHVPNARMVEDLGHEITYILPYESAKDGAFVELFHDMDDHLADLGIS
SYGVSDTTLEEIFLKVAEDSGVDTEILSDGTFPIRRRRRHAFGADHQSCLKPLTEDDRYD
GNESEVDPESRETDYLSGLDGKGSYQIQGWSLKRQQFLALLWKRFLYARRSRKGFFAQIV
LPAVFVCIALVFSLIVPPFGKYPSLALQPWMYEDQVTFISNDAPEDASTQRLLAALMEGP
GFGTRCMEGEPIPDAPCTIGDDDWSIPEVPESVLEVLMSQNWTMDNPSPACECSSDGKKK
MLPECPASAGGLPPPQIKISERDTLQNLTGRNISDYLVKTYAQIIGKSLKNKVWVNEFRY
GGFSLGARSTQVLPPAEEIDDAIARVRVIFNLEKNSGTAADRFLKSLSAFINGLDTKNNV
KIWFNNKGWHSIGAFLNVMNNGILRANLPPEKDPSKYGITAFNHPLNLTKEQLSQVALVT
TSVDVLVSICVIFAMSFVPASFVVFLIQERVNKAKHMQFISGVQPFLYWLANFIWDMCNY
VVPATLVILIFVCFQQKAYVSATNLPVLALLLLLYGWSITPLMYPASFLFEIPSTAYVVL
TSVNILIGINGSVSTFVLELFGNNEIGGINDILKNVLLIFPHFCLGRGLIDMVKNQAMAD
ALERFGENRFRSPFEWDMVGKNLFAMAVEGVVFFIITVLIQYRFFFKPKSLSAKLSPIGE
EDEDVARERQRIVSGAGQGDILELRELTKVYKRKQKPAVDRLCVGIPPGECFGLLGVNGA
GKTTTFKMLTGDTVVTSGEAFLARKSILREIDQVHQNMGYCPQFDAINDLLTGREHLEFY
AILRGVPEREVCEVAEWGIRKLGLVKYSDKAAGSYSGGNMRKLSTAMALIGGPPVVFLDE
PTTGMDPKARRALWNCIHSVIKEGRSVVLTSHSMEECEALCTRMAIMVNGRFRCLGSVQH
LKNRFGDGYTIILRVAGPDPDLQPVMKFIESELPGSTLKEKHRNMLQYQLPSSVSSLAHI
FSILAKHKDFLRIEDYSVSQTTLDQVFVNFAKDQSDDHSDHSIRRKEAAAVDIPLLSLLA
PLKTEDNPKESFV
NT seq
6882 nt
NT seq
+upstream
nt +downstream
nt
atgtccatctccactcagctgaggctgctgctgtggaagaatttcacctacagaagaaga
caaacgctccagctgctgattgagatagtgtggcctctcttcatcttcttcatcttgatc
gcagtgagattgaactaccccccatatgagcagcatgaatgtcactttcccaacaaagcc
atgccctcagcaggcaccctgccatggatccagggcattgtctgcaacgccaacaaccca
tgcttccgccaccctacccctggagaatcccctggcgtagtcggcaacttcaacgattct
ataatatcacgccttttttctgatgccaagaaaatcctactgtacagtcagaatgacaag
agtctggatgggtttaaggagctaatccatgcagtgaaagctctgcagaacaacacgtca
ggtttcaagcttaaagatttcctcaatgacaacgagaccctgtccacattcctcatacag
aacgcctccttctccgaaaattatgttcaggacattctgaaggcagatgtgaacttggaa
aaggtattaaccaaaggctttggagtacatttgagagatatgtgcaacacaacactcttg
gaggactttgtaaacatcacaaacaagaaggtggcaaagctgactcaggaaagcatctgc
agctcctcgaagacctggctaaaccaggctgaaagacacttcatggccaacctggacttc
ttcaagcctttaagggatgccaaaaagatttctaagtcaaggtctgattccaggccagaa
accagagaggcccgtaaagttgctaaagctgcagacaaccttctggaaaacctgggatct
ttggccgtggagctggccagcatgcggagttggagcgacctgcgaaatgagatcctcttc
ctgaccaggaatgcaactggttcccccagccagatgtaccaagctgtgtctagaatagtt
tgtggacatcctgaaggtggcggactcaaaatcaagtccctgaactggtacgaggacagc
aactacaaagctctgttcgggaactacaacagcagcgatgaggagcctgtttcagtctat
gacaacacatccactcccttctgtaacaaccttatgaaaaacatggagacaaacccaatc
tcccgcatgatctggagagctctgaaacctctgcttatggggaagatcctgtacacccct
cacacacctgccacccacaagatcatcaaagaggtcaacaggacatttcaggagttgggt
gtcctccgagatctcgggggaatgtgggaggagactagacccaaagcttggaatttcatg
gagcacagtgaggagatggaccttttgaggactttactacagaacaacgtcacagccgcc
ttcttcagtgcccagctgactggcactcagtggagtgtccaggatgttatcagcttcctg
accaaacaatcagaggacacacgtccgcatgggacagcgttcacgtggagagatgtcttc
aatgagaccgaccaggccattatgagcatatcccgtttcatggagtgtgtaaacctggat
aaactggagcctgtgagtacagaggagaagctaattaacgattctctgggtctgctggac
aacaggaagttctgggctgggattattttccctgacattcaatctaacagctccgaactt
ccaccccacgtcaactataagattcggatggacatcgacaatgtggagcgcaccaacaag
atcaaggacgcgtactgggacccaggtcctagagctgacccgtttgaggatcttcggtat
gtttggggcggattctcttacctgcaggacgtaatagagcaaagcataatcagagcagtt
acaggaaccaaggagaagactggagtctacatccagcagatgccttacccctgctatgtg
gatgacattttcttgcgtgtgatgagtcgctccatgcctctcttcatgaccctcgcctgg
atgtactctgtggccatcattataaaaggcgtggtctacgagaaagaagcccgcctcaag
gaaaccatgaggattatgggattggacaacgggatcctgtggttcagctggtttatcagc
agcctcatccctctactcatgagtgctggactgctggtgcttctgctcaagatgggcaac
ctgctcccctacagtgaccctggggtggtcttcctcttcttgggctcctttgctgtggtc
accatcatgcagtgttttctcatcagcacagtgttcgctcgggccaacctggctgctgcc
tgtggaggaatcatctactttacgctctacctgccctatgtgctgtgcgtggcctggcag
gattacattggcctccctgccaaagtcattgctagcctgctgtccccagtggcgtttggg
tttgggtgtgagtactttgctctgtttgaggagcagggagtgggcatccagtggaaaaac
ctcttctccagcccaatggagaaagatgactacagcctcaccacctccattatcataatg
tacgttgacgccttcatctatggtgtaatgacatggtacatagaggctgtgttccctggt
cagtatggcatccccagaccatggtacttcccatttaccaagtcttactggttcggagaa
ggagaccaaaggccgacaccaattctgaaaggaagaaaagcaaattcaggagctgtgtgc
attgaggaagagcctactcaccttgatatgggagtatacatcgagaacctagttaaggtt
taccgccatggcaaaaagctggctgtggatgacttaacgctgggattctacgagggccag
attacctccttcctgggtcacaatggagcagggaaaactaccaccatgtccatcctgact
ggtctgtttccaccaacctccggcacagcatacatcatgggaaaagacatccgctcagag
ctgagtgccatccggcagagtttgggagtgtgccctcagcacaatgtcctcttcagcatg
ctgacagtggaggagcatgtgtggttctatgcacgtctcaaaggactttctgaagaagag
gtgaaggctgagatcgaccagattttgtatgatactggacttccacataaacgcaagtcc
aggacatgtgagctctctggtggcatgcagaggaagctctcagtggctcttgcttttgtc
ggaggatcaaaggtcgtcattctggatgaaccgactgctggtgtggacccatacgctcgc
agaggcatctgggacctcctgctgaagtaccgcacaggtcgcactatcattctttccact
catcacatggatgaagcagacatcttgggtgaccgcattgccatcatctctcatggaaag
ctgtgctgtgtgggctcctctctcttcctgaagacccatctgggaactggatactacctc
actttggttaagaaagaaccggaagcttctctcagctcctgcaggaactccagcagcact
gtgtcttacgtcaagaaggatgatgaagcctctgagagcagttcagatgctggactgggc
agcgatcatgagagtgatgctgctacagctattggctcttcatggactgactcacctatt
gttcctgcagacatctctctaatctcaggtctgatcattaagcatgtccccaacgcacgc
atggtggaggacttgggccatgaaatcacctacatcctcccctacgaatccgccaaagac
ggagcctttgttgaactctttcacgatatggatgatcaccttgctgatttaggcatctct
agctatggagtttctgacaccactcttgaagagatattcctaaaagtggcagaggacagt
ggggttgatactgaaatattgtcagatggtaccttccctatacgccggcgcagacgacat
gctttcggagctgatcaccagagctgccttaaaccattgactgaagatgaccgatatgat
ggcaatgaatcagaagttgatccagagtccagagagacagattacttgagtggtttggat
ggtaaaggctcataccagattcagggctggagtctgaagagacagcagttcctggccttg
ctgtggaagaggttcctgtatgcccgtcgttctaggaaaggcttttttgcacagattgtt
cttcctgctgtatttgtgtgcattgctctggtcttcagtcttattgttcccccattcgga
aaataccccagccttgcccttcagccttggatgtatgaggatcaggtcacttttattagc
aatgatgcacctgaagatgccagcacacaaagattacttgctgctctaatggaaggccct
ggctttggaacacgctgcatggaaggagagccaattccagatgctccgtgcactataggc
gatgatgactggtccatacctgaggttccagaaagtgtgctggaagtgttaatgtcgcaa
aactggaccatggacaatccctcgccagcgtgcgagtgcagcagtgacggcaagaaaaag
atgctcccagaatgccctgccagtgctggaggactgccacctccacagattaagatcagc
gagagggacaccctccaaaatctgactggaagaaacatctctgattaccttgtgaagaca
tacgctcagatcattggcaaaagtttgaagaacaaggtctgggtgaacgagttcagatat
ggaggtttctcactgggtgctagaagtactcaggttcttccacctgctgaggagattgat
gatgccattgctcgagtgagggtaatctttaacttagaaaagaactctgggacagcagct
gatcgcttcttaaagagtctttctgctttcatcaatggcctggacaccaaaaataatgtg
aagatctggttcaataacaagggctggcatagtatcggagctttcctcaatgtgatgaac
aatggtatcctacgtgccaatctgcccccggaaaaggatccaagtaaatatggcataaca
gccttcaaccaccctttgaaccttaccaaagagcagctctcccaggttgcactggtcacc
acttcagtggacgtgctggtgtccatctgtgtgatttttgccatgtccttcgttcctgcc
agcttcgtagtcttcctcatccaagagcgtgtgaacaaagccaagcacatgcagttcatc
agtggtgtacagccgttcctgtactggctggccaacttcatctgggatatgtgcaattat
gttgtgccagcaaccctggtcatcctcatctttgtgtgcttccaacaaaaagcctatgtc
tctgcaaccaaccttcctgtgctggccctgttgttgcttttgtatgggtggtccatcact
cctctgatgtacccagcctcgttcctatttgaaatccccagcactgcttacgtcgtcctc
accagtgtcaacatcctgatcggcataaatgggagcgtatccacttttgtattggagctg
tttggtaacaatgagattggtggcatcaatgatattttgaaaaatgtgctcctgatcttc
cctcacttctgtctgggccgaggtctgatcgatatggtgaagaaccaggccatggctgat
gctctggagcgattcggtgagaaccgcttccgttcaccttttgagtgggacatggtgggt
aagaacctcttcgccatggcagtagagggagtggtcttcttcatcatcactgtcctcatc
cagtaccgcttcttctttaaacccaagtctctgagtgcaaagttgagccccattggagag
gaggatgaggatgtggccagggagagacagaggattgttagtggagcgggacaaggagat
atcctggaactcagagagctcaccaaggtgtataagaggaaacagaagcctgctgttgat
cgactttgcgtgggcattcctccaggcgagtgctttggtctgcttggtgtgaatggagct
ggaaagacgactactttcaagatgctgacaggagatacagtagtcactagtggagaagct
ttcctagctagaaagagtatactcagggaaatagatcaggttcatcagaacatgggctac
tgccctcagtttgatgccatcaatgacctgctgacgggcagagagcatctggagttctac
gccatcctgcgaggggttcctgagagagaagtgtgtgaggtggctgaatggggcattcgc
aaactgggcctggtaaaatactctgacaaagcagccggaagctacagtgggggcaacatg
cgcaaactctccactgccatggcactcatagggggcccaccagtggtgtttctggacgag
cccaccactggcatggaccccaaggcacgccgtgctctgtggaactgtattcacagtgtc
atcaaagagggtcgctctgtggtgctcacttcacacagcatggaggagtgtgaagccctg
tgcacgaggatggccattatggtgaacggcagattccgctgtctgggcagcgtccaacac
ctgaaaaacagatttggcgatggatacaccatcattctaagagtagcaggcccagaccca
gacctgcagcctgtgatgaagtttatcgagagtgagctgcccggcagcacactgaaggag
aagcacaggaacatgctgcagtatcagctgccctcatccgtctcctccctcgctcacatc
ttcagcatccttgccaaacacaaagacttcctcagaatagaggactactccgtctcccaa
accacactggaccaggtttttgttaactttgccaaggaccaaagtgacgatcactctgat
cactccatccggcgcaaagaggcagcagcggtggacattcctctgctcagcctcctagct
ccactaaagacagaggacaaccccaaggagagcttcgtttga
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integrated database retrieval system
