Astyanax mexicanus (Mexican tetra): 103044173
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Entry
103044173 CDS
T05042
Symbol
pkd1l2a
Name
(RefSeq) polycystic kidney disease protein 1-like 2
KO
K04988
polycystin 1L2
Organism
amex
Astyanax mexicanus (Mexican tetra)
Brite
KEGG Orthology (KO) [BR:
amex00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
amex04040
]
103044173 (pkd1l2a)
04091 Lectins [BR:
amex04091
]
103044173 (pkd1l2a)
Ion channels [BR:
amex04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
103044173 (pkd1l2a)
Lectins [BR:
amex04091
]
C-Type lectins
Others
103044173 (pkd1l2a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Polycystin_dom
PKD_channel
PLAT
Ion_trans
SUEL_Lectin
Lectin_C
GPS
RTC_insert
Motif
Other DBs
NCBI-GeneID:
103044173
NCBI-ProteinID:
XP_022542773
Ensembl:
ENSAMXG00000009958
LinkDB
All DBs
Position
16:complement(34627843..34678414)
Genome browser
AA seq
2591 aa
AA seq
DB search
MALLALSTLLLMLIFSAVEVDGEVDAEALTCPDQQQAFEGSCFEFVSMQRSFFSAQGWCE
RGGGHLAFIQNDETQQFLQKHLQPQLDWWLGLAPASFNLSLDSAATEGPLSWLDGSDVSY
SNWFGEPVPGAGCGYISKDSGFQWGTTTNCSQEFFFICEFESGRSLACADHNATLQCGSG
QVIEIDDSFYGRRTLHYCRNSRSPSQAPAQKECSWMDVVDLVSEHCHGLQVCQATADVAS
FGEPCPGLGSYLSVEYHCKNGLHLLMDKLAAVFENVTLTVKWLLHPFQGNLTCTLGTGDG
HTIDPYSPEGAQGTVVHQYQHAGIYTVTVECSTSEWHVTAQKTITIQEPVGEFRTIRCHS
SNHWTDGENCKGLYQHDLIIQVELESGTNVSYKIQHNGTEISRSSAVRGTVPHNITLPPE
TLQHLGAGCHQLTLLTSNRAAAVDVWTALELCVVEPVEGLLASLASDQDFCSGSFLYINV
SVRSGAPVELLFMISAANENVSETHQTLNSNHQVFNISSTSKGTLNVLVRAWNLFSVMEV
DAGNVTAECQSLSETGQDEHSTGEMVRLPRDSNPEITVDPENPVIGTNSVTLGVKNLQGN
NKQYTFAWSCSQDCPCAVTAITETFVINAACLPAPYSFSVYSLTATRLTGNPKPETATKC
ITVTPRTDFRPVITCSNCSPVNVRMDVNLQLQCSGCQQIVWYFEDTSSVSEIIKSCYSNI
NQKPLIKMGENVSSLTVPSSTLINAVQNIVVLVYGVNGAYSGSTKFTIPIFSTTTTTTST
SQPTTQTPTTTTQPNSATTPSTTTSQLTRGTPTTTTRTTSATTPSTTTSQLTTGTPTTTR
QSTTATTISPTTSQLTTQAPTTTTQATSATTPSITTSTTQSIARPTTSTTTTSPTSTTST
TVPTRFTTTSPPSPPSCTISPTVGDILSPFNITCTVQPSFCWSAPCTYCFRTSSGHYLHC
GHEWAVHSLFLPLGAGSNHSVVVLITVQNGAGQRINTSVSVQVNQVSSGSTVQDLEALVS
KEVNLKGAALAQMYQSVCSRLNGSSANGQEQTARKKLREKMLLNLDTAVNTAPITNPSEM
QMVAGAMVSLTAQSDELSPTAQLNASSLLSDLSQSLVSLAQSEESAKDVMVQAATPLLQA
ASNILKASASTENQEKTSKLLLNAADSIQSAMLAGKPANQEPIIISTAQISMYVNRMSPD
KLQKQSFSIENSSSASFTLPSLGSGVLPLEEPVDVRMLSFGMNPFSWSKSDDISGSVGGL
SLTTENGSAIPVTGLNEEIEILLPRAVVGEVNSTFLDLGNYSTLIINVTTPDISLVLKLD
PSEETPLQLLLGFEEYPNDTNYTAKIQLPHPGVSTEDRYTWVLDSRDLTVEVGVYFLLVR
PVVEAGVNSSNTSVFITSIAAQCKYWDETKTNWSDYGCRVGPRTTPQLTQCLCTHLTFFG
SSFFVMPNLVDVSRTAELFATFVNNPVVVCFVGAIFLAYLLVVIWARRKDIQDTAKLKLT
VLEDNDPLAEYRYLVTVTTGHRLGASTSSQVTVTILGSEGESEPHHLTDPDKPVFERGAV
DMFLLTTPFSLGDLQSIRLWHDNSGTHPAWFVNKVMVQDLETGQKWHFLCSSWLAIDVGE
CTLDKVFPVATEMDLKQFSNLFFMKTAKDFRDGHIWFSVISRPPSSNFTRVQRVSCCFSL
LLCTMLTNIMFWGIPTDPSEQTMDLGKIEFTWQQVMIGIQSSIIMFPINLLIVSIFRNTR
PRERKPENAPKPQPKIDSTKQGKTGRVSPTDPPSPQTERQITPDTVIKDIKKIAQSLSKV
LRSPMPRMDCGNMDINALLSLVEDIIRQQNRAGGEFYSDDCKKELSLSLRAVNLQEGSPE
RTSNEKRHLYRQYLYKQLQNVEKELKLLGPSRFSKPDGYSRAVLQVQSMKGLLEPNPFSS
SSGDWYSGSSSPVEGGDSGDKKKKKCCQKGLPWWFVFVGWFLVAATSGVSAYFTMMYGLT
YGKQKSISWLISMLVSFFESLFITQPVKVLGFAVFFALVLKKVDQEEYGDVPIDGNLPNS
DDPDAVRFARRDSTCSFYQPPPPSNIEKMRNNMIKEQKVFGLIREILIYMGFLWMLLLVA
YGQRDPNAFYLTQHIQQSFSNGISDSMTHGEVFQWANSTLLNNLFGQQPGFITDGNSKLV
GNARLRQVRVQDGSCRVDRSMRNSVPDCHAPYSWDMEDLGSYGPGWNPSIDANLSKTLPT
PWQYQTQSRLRAHPIWGGVAVYRGGGFVVDLGPNRENASSSLQYLFENTWLDMFTRAIFV
EFTVYNANVNLFCIVTLMFETTAVGAFQYRSELQSVRLYQSTGGLHIFVMASEVVYFLFI
FYYMFQQGKLMKQQKWEYFRSKWNLLDMAIIILSWSALPVFIKRTLLGNQSIEYYQNHKD
EYAGFNETATADAVLGYIIAFLVLLATVKLWHLLRLNPKLHMITSTLQRAWNDISGFIVV
MTIMFLAYSVACNLLYGWKLYSYRTLLNAAQTIVSLQLGIFNYEEVLDYNPVLGAFIVGS
CIIFMTFVVLNLFISVILVAFSEEQIHHKPSEEEEIVDLMLMKICSLFGVKVKNQQQNDA
TIANTGPSVIS
NT seq
7776 nt
NT seq
+upstream
nt +downstream
nt
atggcccttcttgctttatccactctgctactgatgctgatcttctctgcagtagaggtg
gatggtgaggtggacgcagaggctctgacctgtccggatcagcagcaggccttcgagggc
tcctgctttgagtttgtgtctatgcagcgcagcttcttcagcgctcagggctggtgcgag
cgcggcgggggacatctggccttcattcagaatgatgagactcagcagttcctccagaaa
catctgcagccacagctggactggtggttgggtctggcaccagcctcctttaacctcagc
ctggactctgctgccactgagggtcccctgtcctggctggatggctctgatgtaagttac
tctaactggtttggggagcccgtgccaggagcaggatgtggatacatctccaaagactct
ggattccaatggggaacaacgacaaactgcagccaggagttcttcttcatctgcgagttt
gagtcgggacgctctctagcatgtgcggaccacaatgccacactgcagtgtgggtctggt
caggtgatagagattgatgacagcttctacggcaggaggacactccactactgcaggaac
agccgttcaccctctcaagcacctgcacagaaggagtgcagctggatggatgtggtggac
ttggtttcagagcactgccacggtctgcaggtgtgtcaggctacagcggacgtagcgtca
ttcggtgagccgtgcccgggactggggagctacctgtcggtggaatatcactgcaagaat
ggtcttcatctgctgatggataaactggctgctgtgtttgaaaacgtcactttaacagta
aagtggctgctccacccattccagggtaacctcacatgcaccctgggtactggagacggg
cacaccatcgacccctacagtcctgaaggggcgcagggtactgtggtgcaccagtaccag
catgctggcatctacaccgttacagtggagtgcagcaccagcgagtggcacgtcactgct
cagaaaaccatcaccatccaggagccggtgggagaattcaggacaataagatgccacagc
tcaaatcattggacagacggggaaaactgtaaaggcctttaccagcatgatctgattatt
caagtggagctggaatcaggaactaacgtcagctacaagatccaacacaatgggacagaa
atcagccgctcgtctgcagtcagagggactgttccccacaacatcaccttacccccggaa
accctgcagcatctgggggcaggatgccatcaactgactctcttgacctccaacagagca
gcagctgtagacgtatggactgctctggagctgtgtgtggtggagccagtggagggcctg
ttagcttctttagcatcagaccaggatttctgttctggatcatttctgtacataaatgtt
tctgttaggagtggagctccagtggagctactctttatgatctcagcagccaatgagaac
gtctctgagacccatcagacacttaacagcaaccaccaggtctttaacatctccagcaca
tcaaaaggcacactaaatgtgctggtcagagcatggaacctgttttcagtgatggaagtg
gacgctgggaatgtaacagcagagtgccagtctctctcagagaccggacaggatgaacac
tcaacaggcgaaatggttagactcccaagagacagtaatccagagatcactgtagatcca
gaaaacccagttatcggcacaaacagtgtcacactgggagttaaaaacctgcagggaaat
aataaacagtatacgtttgcctggagctgcagtcaggactgtccctgtgcagttactgct
atcactgaaacatttgtgataaatgcggcctgtctccctgcaccctacagtttctcagtc
tattctctgacggctacaagattgacaggaaatccaaagcctgaaacagcaaccaaatgc
atcactgttacaccacggaccgatttccgtccggtcatcacatgttctaactgcagtcca
gtgaacgtccgcatggatgtaaatctgcagttgcagtgcagcggctgccagcagatagtt
tggtactttgaggacacgagttctgtatctgaaattataaaatcctgctattccaacatt
aatcagaaaccgctgataaagatgggagaaaatgtcagctctctcactgttcccagttca
actctgattaatgcagtgcagaatatcgttgttctggtttatggtgtaaacggtgcctat
tctggatctactaaattcaccattccaatcttctccactacaaccactacaacctcaacc
tcacaacctactacacaaaccccaacaaccacaacacaaccaaactcagcaaccaccccc
tccactacaacctcacaacttactagaggaaccccaaccactaccacacggacaacctca
gcaaccaccccctccactacaacctcacaacttactacaggaaccccaacaaccacaaga
cagtcaaccacagcaaccaccatctcccctacaacctcacaacttactacacaagcccca
acaacaacaacacaggcaacctcagcaaccaccccctccattacaacctcaaccacacag
tctatagccaggcccaccacatccacaaccacaacttctcccacttctacaacctccact
actgtaccaacacgctttaccactacaagcccccccagcccaccctcctgcactattagc
cccacagtgggagacattctctccccattcaacatcacctgcactgtgcagccctccttc
tgctggagcgccccctgtacttactgcttcagaacatcttcaggtcactaccttcactgt
ggtcatgagtgggcagtacattccctcttcctccctctgggagctggtagtaaccattct
gtggttgtgctcatcacagtgcagaatggagctggacagaggattaacacctctgtatct
gtgcaggtgaatcaggttagctctgggtctacagtgcaggatctggaggctctcgtgtcc
aaagaggtgaatctcaaaggagcagcactggctcagatgtaccagtctgtgtgcagcagg
ctgaatgggagctcagctaatggtcaagagcagactgccaggaagaagctcagagagaag
atgctgttaaacctggacacagcggtaaacacagcccccatcacaaacccttcagaaatg
cagatggttgctggagctatggtgagcctcaccgcccagagtgacgagctgtcccctaca
gcacagttaaatgccagctctctcctgtcagacctcagtcagtccctggtgtctctcgcc
cagtctgaggaaagtgccaaagatgtaatggtgcaggcggccacgccccttcttcaggct
gccagtaacatcctcaaagcttctgccagcacagagaaccaggaaaagacctccaagctt
ttgctgaatgcagcagacagcatacagagtgccatgctggccggcaaaccagcaaaccag
gagccaatcatcatcagcactgcccagatcagtatgtatgtgaacagaatgtctccagat
aagcttcagaaacagtcattcagcattgagaacagcagctccgccagcttcacgctcccg
tctctgggttctggtgtgctgccgttggaagaaccagtggatgtgaggatgctgagtttt
gggatgaaccctttctcctggagtaaatctgatgatataagtggatcagtggggggtctg
tccctcaccacagagaacggctcggccatcccggtcacaggtcttaatgaggaaatagag
atcctcttaccgagagcagtggttggagaggtgaacagcacatttctggacttgggaaac
tacagtactctaatcatcaacgtgacgacacctgatatatcactggtgctgaaactggac
ccctcagaggagacacctctacagttactcctgggctttgaggagtatcctaatgacacc
aactacacggccaaaatccagcttccacatccaggagtctcaacagaggacaggtacacc
tgggtgctggactcgagggatctgacagttgaagtaggagtttattttcttttggtgagg
ccggttgtagaagctggtgtaaactcctcaaacacttccgtcttcatcacctccatcgct
gcccagtgcaagtactgggatgagactaaaaccaactggagtgactatggctgtagggtc
ggcccccggaccacgcctcagctcactcagtgcttgtgcactcacctgaccttctttggg
agctctttctttgtcatgcccaacctggtggacgtgtctcgcactgctgagctttttgcc
acgttcgtcaacaaccctgtggtggtgtgttttgtgggcgccatcttcctggcctacctg
ttggttgtgatctgggcaagaaggaaggacatccaggacacagccaagttgaagctaaca
gttctggaggataatgatcctttggcggagtatcgctacttagtgaccgtcaccactggc
catcgactgggagcatctacctcctctcaggtaacagtgacaatcctgggctctgagggg
gagagtgaaccccaccacctgactgatccggacaagccggtgttcgagagaggagcggtg
gacatgttcctgctgaccaccccgttctctctgggagatctgcagagcatcaggctgtgg
catgataactccggaacacatccagcctggtttgtgaataaggtgatggttcaggacttg
gagacaggtcagaagtggcatttcctgtgcagctcctggctggccatcgatgtgggagag
tgtaccttggataaagtctttcctgtggccacagagatggacttaaaacagtttagtaat
ctgttcttcatgaagaccgcaaaagatttccgggatggtcacatatggttctctgtgatc
agtcgtccgcccagcagtaacttcactcgggttcagcgggtctcctgctgtttctctctg
ctgctctgcactatgctgaccaacatcatgttctggggaatacccactgacccttcagag
cagaccatggatctgggtaagatcgagtttacatggcagcaagtgatgattggcatccag
agctccatcatcatgttccccatcaacctcttgatcgtcagcatcttcagaaacacccgg
ccaagagaacgaaagccagaaaacgctcctaaaccgcagcccaagatagattctaccaag
caggggaaaacaggacgggtgtccccgactgaccctccctctccacagactgagcgacag
atcactcctgatactgtgattaaggacatcaaaaagatagcccagtccctgtccaaggtt
ctgaggagccccatgccaaggatggactgtgggaacatggatattaacgctctgctgtcg
ctggttgaggacattattcggcagcagaaccgcgcgggtggcgagttttactctgatgac
tgcaagaaagagctttctctctctctgagagctgtgaatctgcaagagggcagccctgaa
cgcacttcaaacgagaagcggcacctctacagacagtatctctacaagcagctccagaac
gtggagaaagagctgaagctgctgggtccgtcacggttctccaagccggacggctacagc
cgggcagtgctgcaggtccagagcatgaagggactgctggaacccaaccctttctccagc
tccagcggggactggtactccggcagctccagccctgtggaaggtggagacagtggagac
aagaagaagaagaagtgctgtcagaaaggtctgccctggtggttcgtgtttgtgggctgg
tttcttgtggcagccaccagcggcgtgtcggcgtacttcaccatgatgtatgggctgacc
tatgggaaacagaagtccattagctggctcatttcaatgctcgtgtctttttttgagagt
ctcttcattacccagccagtgaaggtgcttggatttgctgtcttctttgctctggtgctg
aagaaagttgatcaggaggaatatggcgacgttcccattgatgggaatcttccaaattca
gatgatccagatgctgtgcgctttgcccgaagggacagcacctgcagtttctatcagccc
cctccgccttctaatatcgagaagatgaggaacaacatgatcaaagaacagaaagtcttc
gggctgatccgagagatcctcatctacatgggctttctctggatgctgctcctggtggct
tacggtcagcgtgatccgaacgccttctacctcactcagcacattcagcagagcttcagc
aacggcatctcagacagcatgacccacggagaagtgtttcagtgggctaacagcaccctc
ctaaataacctcttcgggcaacaaccaggtttcatcacagacggaaactcgaagctggta
gggaacgctcgtctgcgtcaggtccgagtgcaggacggatcctgcagggtggacagatcc
atgcggaactctgttcctgactgccacgctccgtactcctgggacatggaggacctgggc
tcgtatggtcctggctggaacccctcgatagatgccaacctgtctaagaccctgcccacc
ccctggcagtaccagacccagtccagactcagagcacaccctatctggggtggggtggct
gtgtatagaggaggaggttttgtagtggacctgggacccaacagagaaaacgcaagcagt
tctcttcagtatctatttgagaacacctggctggatatgttcacccgggccatcttcgtt
gaattcactgtttataacgccaacgtgaacctgttctgtatcgtcaccctgatgttcgag
accacagctgtgggagcgtttcagtatcgcagcgagctgcagagcgtccggctctaccag
tccaccggcggacttcatatatttgttatggcctctgaggtcgtctacttcctcttcatc
ttttattacatgttccagcagggtaaactgatgaagcagcagaagtgggagtatttcagg
agcaagtggaatctgttagacatggccatcattattttgagctggagtgcgttacctgtt
tttatcaagaggacacttttgggtaaccagagcattgagtactaccaaaaccacaaagat
gaatatgctggttttaatgaaaccgcgacggctgatgcggttctcggatacatcatcgct
ttcctggttctgcttgccactgtcaaactgtggcacttgctgcgcctcaaccctaagctt
catatgatcacctccacgctgcagcgggcatggaacgacatctccggcttcattgtggtt
atgactatcatgttcctggcctactctgttgcttgtaatctgctgtacggttggaagctt
tactcgtaccggactcttctcaatgccgcccagacaatcgtcagtttacagctgggaatc
ttcaactatgaggaagttttggattataaccctgttctcggagcgtttatcgtcggatcc
tgcatcatcttcatgacgtttgtggttctgaacctgttcatatctgtcatcctggtggcg
ttcagtgaagaacagatacaccataagccgtccgaagaggaggaaatcgtggacctgatg
ctaatgaagatctgcagcctgtttggagttaaagtgaagaaccagcagcagaatgatgcc
acgatcgccaacacaggaccttctgtcatatcatag
DBGET
integrated database retrieval system
