Astyanax mexicanus (Mexican tetra): 103044384
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Entry
103044384 CDS
T05042
Symbol
ddx18
Name
(RefSeq) ATP-dependent RNA helicase DDX18
KO
K13179
ATP-dependent RNA helicase DDX18/HAS1 [EC:
5.6.2.7
]
Organism
amex
Astyanax mexicanus (Mexican tetra)
Brite
KEGG Orthology (KO) [BR:
amex00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
amex03041
]
103044384 (ddx18)
03009 Ribosome biogenesis [BR:
amex03009
]
103044384 (ddx18)
Enzymes [BR:
amex01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
103044384 (ddx18)
Spliceosome [BR:
amex03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
103044384 (ddx18)
Ribosome biogenesis [BR:
amex03009
]
Eukaryotic type
90S particles
Helicases
103044384 (ddx18)
Pre-60S particles
103044384 (ddx18)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CTE_SPB4
ResIII
AAA_22
Motif
Other DBs
NCBI-GeneID:
103044384
NCBI-ProteinID:
XP_007261116
Ensembl:
ENSAMXG00000024269
UniProt:
A0A8B9KUL2
LinkDB
All DBs
Position
11:complement(35116995..35125249)
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AA seq
662 aa
AA seq
DB search
MADLQMKLLRKKIQKRSEKNKERKLRQQQQQEEEDTESKTITEECCTDGVKKTTSKVLQN
DQPQVDQIDGEDTVTENSSKKKKKKKKRKLDQEDTPTNSNVKKAKQENGEDGENEMEATE
DSELEEQLCEDGMDEGADDQKDGNDESEEEEDDGPALPSGLTGAFEDQSFASLAELVSEN
TLKGIKEMGFENMTEIQHKSIRPLLEGRDVLAAAKTGSGKTLAFLIPAIELIYKLRFMPR
NGTGVIILSPTRELAMQTYGVLKDLMLHHVHTYGLIMGGSNRSAEAQKLGNGVNILVATP
GRLLDHLQNTAGFMYKNLQCLIIDEADRILEVGFEEELKQIIKLLPKKRQTMLFSATQTR
KVEDLARISLKKEPLYVGVDDNKETATVEGLEQGYVVCPSEKRFLLLFTFLKKNRKKKLM
VFFSSCMSVKFHYELLNYIDLPVMAIHGKQKQTKRTTTFFQFCNADSGILLCTDVAARGL
DIPEVDWIVQYDPPDDPKEYIHRVGRTARGINGIGHALLILRPEELGFLRFLKQAKVPLS
EFEFSWSKISDIQSQLEKLIEKNYYLHKSAQEAYKSYVRAYDSHSLKQIYNVQTLNLPQV
ALSFGFKVPPYVDLNVHSSKGVKLQKRGGGGGFGYQKSKNVQKAKIFKHVNKGRGDRRQF
SR
NT seq
1989 nt
NT seq
+upstream
nt +downstream
nt
atggcggatcttcagatgaaactcctgcgaaagaaaatccagaaaagaagtgaaaaaaat
aaagagcgcaaactgcgacaacagcagcagcaggaggaggaggatactgaatctaaaaca
atcacagaagaatgctgcacagatggagttaaaaagaccacaagtaaagttttacagaac
gaccagcctcaggtagatcaaatagatggggaggatacggtcacagagaacagtagtaag
aagaagaagaaaaagaagaagaggaagctggaccaagaagacactcccaccaactccaat
gtgaaaaaagctaaacaggaaaatggtgaggatggtgaaaatgagatggaagccactgaa
gacagtgagctagaagaacagctatgtgaggatggaatggatgaaggggctgatgatcag
aaagatggcaatgatgaaagtgaagaagaggaagatgatggaccagcacttccgtctgga
cttacaggagcttttgaggatcagtcgtttgcttcactagccgagcttgtgagtgagaat
accttgaagggtattaaggagatgggatttgagaatatgaccgagatccagcacaaaagc
atacgccccctattggaggggagagatgttttggcagctgctaaaacaggcagtgggaaa
actctggccttcctcattcctgctatagagctaatctacaaactcagattcatgcccaga
aatggtactggagtgatcattttgtctccaacacgtgagttggccatgcaaacatatgga
gtgctgaaggaccttatgttgcatcatgtgcacacatatggtcttatcatgggtggcagc
aaccgttcggcagaagcacagaaacttggtaatggagtcaatatattggtggccacacct
ggaagactgctcgaccacttacagaacacggctggtttcatgtacaagaacctgcagtgt
ctgatcattgatgaagcagacaggattctggaggttggcttcgaagaagaacttaaacag
atcatcaaactgctgccaaagaaaagacagaccatgctgttctcagctacacagacaagg
aaggttgaggatctggcacgaatctctctgaaaaaggagccactgtatgtgggagtggat
gacaacaaagaaacagccacagtagaaggactggagcagggttacgtggtgtgcccgtct
gagaaacgcttcctgctgctcttcacgtttctgaagaagaaccgcaagaagaagctgatg
gtgtttttttcctcctgcatgtctgtgaagttccactatgagcttctcaactacattgac
ttacctgtcatggctatccatggcaagcagaagcagaccaagagaaccaccacgtttttc
cagttctgtaatgcagactccggcatcctgctctgcactgatgttgctgcccgaggcctc
gacatccctgaggttgactggattgtacagtatgacccacctgatgacccaaaggaatat
atccatcgtgtgggcagaactgctcgaggtattaatggcataggccatgctctactcatc
ctcagaccggaggagcttgggttcctgcgtttccttaaacaggccaaggttccattgagt
gaatttgaattctcctggagcaagatctcagacatccagtcacagttggagaagttaatt
gagaagaactactacctgcacaagtcagcacaggaggcttacaagtcgtatgtgcgagcc
tacgattctcactctctcaaacagatctacaacgtacagacgctgaaccttccccaggtg
gcgctgtcctttggattcaaagtaccgccctacgttgacctgaatgtgcacagcagtaaa
ggggtaaagcttcagaagagaggaggaggcggaggctttggctaccagaaatccaaaaat
gtgcagaaggccaagatcttcaagcacgtcaacaagggcagaggagaccgtcgacagttc
tctcgctga
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