Astyanax mexicanus (Mexican tetra): 103044853
Help
Entry
103044853 CDS
T05042
Symbol
vps39
Name
(RefSeq) vam6/Vps39-like protein
KO
K20183
Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39
Organism
amex
Astyanax mexicanus (Mexican tetra)
Pathway
amex04140
Autophagy - animal
amex04148
Efferocytosis
amex05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
amex00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
103044853 (vps39)
04148 Efferocytosis
103044853 (vps39)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
103044853 (vps39)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
amex04131
]
103044853 (vps39)
Membrane trafficking [BR:
amex04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
103044853 (vps39)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps39_1
CNH
zf-Vps39_C
TPR_Vps41
Clathrin
WD40_like
Beta-prop_RIG_2nd
Motif
Other DBs
NCBI-GeneID:
103044853
NCBI-ProteinID:
XP_007253876
Ensembl:
ENSAMXG00000008277
UniProt:
A0A8B9KZ50
A0A3B1K5G0
LinkDB
All DBs
Position
14:complement(20425255..20444324)
Genome browser
AA seq
875 aa
AA seq
DB search
MHDAYEPVPILEKLPLQIDCLAAWEDWLLVGTKPGHLLLYRIKKDAGTNRFEVTLEKSNK
NFSKKIQQLYVVSQYKILVSLLENNIHVHDLLTFQQITVVSKARGATLFACDLQQTSSGE
AKLRMCVAVKKKLQLYYWKDREFHELQGDLAVPDIPKSMAWCENSICVGFKRDYYLIRMD
GRGSIKELFPTGKQLEPLVAPLADGKVAVGQDDLTVVLNEEGVCTQKCALNWTDIPVAME
HQPPYIIAVLPRYVEIRTFEPRLLVQSVELQRPRFITSAGPNIVYVASNHFVWRLVPVSI
ASQIRQLLQDKQFELALQLAKMKDDSDGDKRQQIHHIQNLYAFNLFCQKRFDDSMQVFAK
LGTDPTHVIGLYPDLLPSDYRKQLHYPNPLPTLSGAELEKAHLALIDYLTQKRSHLVKQL
NDSDPSTTSPLMEGTPTIKSRKKLLQIIDTTLLKCYLHTNVALVSPLLRLENNHCHVEES
EYVLKKAHKYSELIILYEKKGLHQKALQVLLDQSTKANSPLKGHERTVQYLQRLGTENLG
IIFEFSPWVLKICPEDGLKIFTEDLPEVEMLPRDKVLDFLKEGFKELAVPYLEHIIHVWD
EMGPEFHNVLIQLYLERVQTLMKEYLNSLPEGIPAVAAGKEEGELGEFRNKLLCFLDVSS
AYEPERLISDFPFDGLLEERALLLGRMGKHEQALFIYVHILKNTYMAEEYCHRHYDKLAD
GSKDVYLSLLRMYLSPPDVHCLGPIKMELSEPQANLQAALQVLELHHSKLNTTKAINLLP
ANTQIREIRVFLESVLEEKAQRKRFDQVLKSLLQAEFLRVQEERIFHQQVKCVITEEKTC
RVCKKKIGNSAFARYPNGVVVHYFCCKDRSLCPTE
NT seq
2628 nt
NT seq
+upstream
nt +downstream
nt
atgcatgacgcctatgagcccgtacctattttggagaagttgcccctacagatcgactgc
cttgcggcctgggaggactggctgcttgtgggtacaaaaccaggccacctccttctctac
agaatcaagaaggatgcaggtacgaatagatttgaagtaacacttgagaaatccaacaag
aacttctcaaagaagatacagcagctgtatgttgtttcccagtacaagattttggtcagt
ctgctggagaataacatccacgtccatgacctactcacttttcagcagattactgttgta
tcaaaggctagaggagctacactctttgcttgtgacttgcagcaaacctcctccggtgaa
gcaaaattgcggatgtgtgttgctgtaaaaaagaaactacagctgtactactggaaagac
agggagttccatgagctgcagggagatttagcagtaccagatattcccaagtccatggcc
tggtgtgaaaattccatatgtgttggtttcaaacgtgattactacctgattcgaatggat
ggacgtggctcaatcaaagagctgtttccaacaggaaagcagctagagccgctggttgca
ccattggctgatgggaaagtggcagttggtcaggatgacctcacagttgttttaaatgaa
gaaggagtgtgtactcaaaagtgtgccctcaactggaccgacatccctgttgcaatggag
caccagcccccatatattattgcagtgctgccacggtatgtggagatccgtacctttgag
cccaggctgctggtgcagagtgtggagcttcagaggccacgctttatcacctctgctggg
cccaatatagtgtacgttgccagcaaccattttgtttggcgacttgtgccagtctccata
gccagccagatccggcagctcctgcaagacaagcagtttgagctggctcttcagttggcg
aaaatgaaggatgactccgatggtgataaaaggcagcagattcaccacatccagaaccta
tatgcctttaatcttttctgtcagaagcgcttcgatgactccatgcaggtgtttgcaaag
cttggaacagatcctacacatgtgattggactgtatccagacctactaccctctgactat
cggaaacagctgcattaccccaacccactgcccactctctcaggagctgagctcgagaaa
gcccacttagctctcattgactacttaacacagaaacgcagccatttagtaaagcagctg
aatgactcagacccctcaaccacctcccctcttatggaaggtacacccacaatcaaaagc
cgtaaaaagctccttcagatcatagacaccaccctgcttaaatgctacctccatacaaat
gtcgccttagtatcacccctcctgcgcctggagaacaaccactgtcatgtagaggagagt
gagtatgtgctgaagaaagcccacaaatacagcgagctcattatcctctatgagaagaag
ggcttacatcagaaagccctgcaggtccttctggatcaatccactaaagccaactcccct
ctgaagggtcatgagaggacagtgcagtatctccagaggctaggcacagagaatctgggt
atcatttttgagttctccccatgggtgctgaagatttgcccagaggacggtctgaagatc
ttcacagaggacctgccagaggtagaaatgcttccaagagacaaagtgctggacttctta
aaggagggcttcaaggagctggctgtgccatatctggagcacattatccatgtgtgggat
gaaatgggccctgagttccacaacgtactgatccagctctacctggagagagtacagacc
ctgatgaaggagtatctcaactcactgcctgaaggtattccagctgtagctgcaggaaaa
gaggaaggtgagcttggagaatttcgtaacaagctgctgtgtttcctggatgtttcctcg
gcctatgaaccagaaaggctcatcagtgacttcccatttgatggtctgctggaagaacga
gctctgctcttgggccgaatgggaaaacacgagcaagctttattcatctatgtgcacata
ctgaagaacacatacatggcagaggagtattgccacaggcattatgacaaattagcagat
ggaagtaaagatgtgtacctgtctctgctccgcatgtacctgtctcctccagatgtgcat
tgtcttggtcccattaagatggagttatctgagccccaggcaaatctccaggctgccctg
caggtccttgagctgcaccacagcaagctcaacactaccaaggccataaacctgctccca
gcgaacactcagatacgggagatccgcgtgtttctggagagtgtattggaggagaaagct
cagaggaaacgctttgaccaggtccttaagagtctgctccaggctgagttcctgcgggtc
caggaggagcggatctttcatcagcaggtgaagtgtgttattactgaggagaagacctgc
cgggtgtgcaagaaaaaaattggaaacagtgcctttgccaggtatccaaatggtgtggtg
gtccattacttctgctgcaaggatcgcagtctgtgtcctactgaatag
DBGET
integrated database retrieval system
