Astyanax mexicanus (Mexican tetra): 103045127
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Entry
103045127 CDS
T05042
Symbol
roraa
Name
(RefSeq) nuclear receptor ROR-alpha A isoform X1
KO
K08532
RAR-related orphan receptor alpha
Organism
amex
Astyanax mexicanus (Mexican tetra)
Brite
KEGG Orthology (KO) [BR:
amex00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
amex03000
]
103045127 (roraa)
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
amex03310
]
103045127 (roraa)
Transcription factors [BR:
amex03000
]
Eukaryotic type
Zinc finger
Cys4 thyroid hormone receptor-like
103045127 (roraa)
Nuclear receptors [BR:
amex03310
]
1. Thyroid hormone like
1F. RAR-related orphan receptor
103045127 (roraa)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-C4
Hormone_recep
Motif
Other DBs
NCBI-GeneID:
103045127
NCBI-ProteinID:
XP_007246555
Ensembl:
ENSAMXG00000000403
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Position
2:56486228..56927350
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AA seq
521 aa
AA seq
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MESPPDPTSDPGNSASESATPVRETPVNLETLRKAEHHQAPPVRRQSCSSTNRGISVTKK
THTSQIEIIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQSNAAYSCPRQKNCLIDRTSR
NRCQHCRLQKCLAVGMSRDAVKFGRMSKKQRDSLYAEVQKHRLQQQQRDHQQQPGEAEPL
TPTYGLSANGLTELHDELSGYMDGHTPDGSKPDSGVSSFYLDIQPSPDQSGLDINGIKPE
PICDFTPGSGFFPYCSFTNGETSPTVSMAELEHLAQNISKSHMETCQYLREELQQMTWQA
FLQEEMESYQNKPREVMWQLCAIKITEAIQYVVEFAKRIDGFMELCQNDQIVLLKAGSLE
VVFVRMCRAFDPQNNTVYFDGKYAGPDVFKSLGCDDLISSVFEFGKNLCSMHLSEDELAL
FSAFVLMSADRSWLQEKVKVEKLQQKIQLALQHVLQKNHREDGILTKLICKVSTLRALCS
RHTEKLTAFKAIYPDIVRTHFPPLYKELFGSDFEQSMPVDG
NT seq
1566 nt
NT seq
+upstream
nt +downstream
nt
atggagtcccctccagatccaaccagcgacccgggcaacagcgcctcagagtcggctacc
ccggtcagggaaaccccggtaaacctggagactctccgcaaagctgagcaccaccaagcc
cccccggtcaggagacagagctgctccagcaccaatagaggtatttcagtaacaaagaag
acacacacttctcaaattgaaattattccctgcaagatctgtggagacaaatcatcaggc
atccattacggcgtgataacatgtgagggctgtaagggtttcttcaggaggagtcagcag
agcaatgctgcgtactcgtgcccacgtcagaagaactgcctgatcgaccgcaccagccga
aaccgctgccagcactgcaggctgcagaagtgtctggccgtgggcatgtcacgggacgcg
gtgaagttcggtcgcatgtccaagaagcagcgggacagtctgtatgcagaggtgcagaag
caccggctccagcagcaacagagggaccaccagcagcagcccggtgaggccgagccgctc
acccccacctatgggctgtcagccaacggcctgaccgagctgcacgacgagttgagcggc
tacatggacggacacacgccggacggcagcaagcccgactcaggtgtcagcagcttctac
ctggacatccagccctcacccgaccagtccggcctggacatcaacggcatcaagcctgag
cccatctgcgacttcacgcccggctcaggcttcttcccctactgttccttcaccaacggc
gagacttcacccaccgtctccatggctgagctagagcatctggcccagaacatctccaag
tcccacatggagacgtgtcagtatctgagagaggagctgcagcagatgacctggcaggcc
ttcttgcaggaggagatggagagctatcagaacaagcccagagaagtcatgtggcagttg
tgcgccattaaaatcacagaggccatccagtatgtggtggagttcgccaaacgcatcgac
ggcttcatggagctttgtcagaacgatcagatcgtgctgctcaaagcaggctctttggag
gtggtttttgtcagaatgtgccgtgcctttgacccccagaacaacacagtctatttcgat
ggaaagtatgctggtcctgatgtgtttaagtcattaggctgtgacgacttgatcagctct
gtcttcgagtttgggaaaaacttgtgttctatgcacctgtctgaggacgagctcgccctg
ttctcggcgttcgtgttgatgtctgcagaccgttcctggctccaggagaaggtgaaggtg
gagaaactgcagcagaagatccagctggccctacagcacgtcctgcagaagaaccacaga
gaggatggcatactcacaaagttgatatgcaaagtgtcgacactgcgagcgctgtgcagc
aggcatacagagaagctgactgctttcaaagcaatatacccagacattgtgcgcacccac
ttccccccattatacaaggagctgtttggatcagactttgagcagtccatgcctgtggac
ggctag
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