Astyanax mexicanus (Mexican tetra): 103045334
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Entry
103045334 CDS
T05042
Symbol
tdrd12
Name
(RefSeq) putative ATP-dependent RNA helicase TDRD12 isoform X1
KO
K18409
ATP-dependent RNA helicase TDRD12 [EC:
5.6.2.5
]
Organism
amex
Astyanax mexicanus (Mexican tetra)
Brite
KEGG Orthology (KO) [BR:
amex00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
amex03036
]
103045334 (tdrd12)
Enzymes [BR:
amex01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.5 RNA 5'-3' helicase
103045334 (tdrd12)
Chromosome and associated proteins [BR:
amex03036
]
Eukaryotic type
Gene silencing
piRNA pathway
103045334 (tdrd12)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TUDOR
CS
Helicase_C
Motif
Other DBs
NCBI-GeneID:
103045334
NCBI-ProteinID:
XP_022528018
LinkDB
All DBs
Position
2:complement(53610240..53633115)
Genome browser
AA seq
1422 aa
AA seq
DB search
MDKSGGMLEISIIKVVDPGCLWGKVVKGPGMQAENPREYEDLQTKMNLFYHDVNLEVQEI
KPTTLEEGQLCAVFCPVLKSWCRATVESLFVGTVGSQAMCFLVDHGERFIINTDDVRALL
EKFLQLPFRVRRFQLARIYPMRLKVSISTETAELVPSPCWDVSATKYLHNLLKVSTLVEA
VLCETNADCTAVELYLTIRNVKICVNDDLVVKKFACYSSEKAITEEQNESLDRSLVSLAW
DMFSRPQQILEMNGCCTVRSHFPRVVPKKETEQLGLTLLANPPMSVVKSPHPTVEVSAME
TKTETSGVSEEDESTWSLEKDDCVTGNSEQTENTEGALAEQLSLKLNLIRVMKFLNPFSH
LNLIEEPNEADEQKQTSHGESAAEKSDLTLSQYLEEDSAICLEMEKTTKSSAQNDSDLSH
STSNDTSTELKETDFSQESNAKDQLSCARLLQLLNPDPLNLDTECIEDNIVCYEPTRRGV
LVHSAVTVNPCSNLSLAPITEQFRKFLLRRKYNGPGLAESYAWPSVARGCDTVLVVHGGN
DPLTYIPPLLAQLQMASVFSALNTRKGPIAVILCPGWEKVQYVLDLLEDSQAAASLHPAA
VLLGLKKDEAKNAKIQKNCQLLVTTPFSLARLLEVHCFLFLRLCHLVLDEVSELYSRAPD
QMSAILKHFREVAREKSLECSQQTVAVSNQWSRELDGLITEHMVSPCVVVTVPEEAAVYG
GVLQTVLLCLDCNKTSVMLSSLDFSPSVPQKTLIVTNSVEEVEHVYKAVSNTAAFSLKAH
EGLSYQFDFVVEQWKKDIGSGTQVILVTTNDSMKALGIRDATCVVHYGFPGSPKLFGNRL
FCMSDNFQNQAKKSSSPVVRSVMLLSERNARHVSGVLRYLKRTCATLPPELLQFSEGVQQ
AKEEQKIGRALCSHLKSLGFCRESAVCPDRHIINRTLDHPLHPDSGTVQVLPLYIKSANV
YYGRIVSQKQDQFKDLAAEMNSHYTEERVFAKDVVKGGLYAVHEEEEYHRVCVTKVPDKE
DKLFSSVTAHFIDDGYVQEVKSHQLLQLPSEFQSLPGQAVEIILCRVQPIDGEMDWNPKV
TRAISLKIKGKLHQAKLIKCLGSTVWVDPMIRVTRVPGLSSFINEYNVHDEIIATGMGTI
NSQHLELLKTLCFGEEASAAVVPSGSERCESEELRVQAAEEALASRMKAAFPSLCSVDKL
TANYHSADICEPSEVMKNIRPTQITVPNGGLSIATMVDDGQIDRSVQPRLLPLVWTAAVS
NSSQKETTGETEMAEILHTEKSVDLVPQSFHPQIKWFQREESVTLKVKLVNPMMQKCEFF
SDRVLYSSYVRSRRYCADLELHSDIRTEQCKWEMKCNEPEITLVKKEKGLWKSLLKCKNT
FVSYDFDHIEDEDKPATNDCSFLASTGEVGIYTNSGSGSDSD
NT seq
4269 nt
NT seq
+upstream
nt +downstream
nt
atggacaaaagtggaggaatgttagagatatcaataattaaggttgtggatccaggatgt
ttgtggggaaaagttgtgaaaggacctggcatgcaagctgagaaccctcgtgaatatgag
gacctgcagactaaaatgaatcttttctatcatgatgtaaacctggaggtgcaggaaata
aagccaactacgcttgaggaaggacagctgtgtgcggtgttttgcccagtgctgaagagc
tggtgtagggccacagtggagtctctctttgtgggaacagtaggcagtcaggccatgtgt
tttttggtggatcatggagagcgtttcatcatcaatacagatgatgtgagggctcttctt
gagaagttccttcagctgcctttccgagtgcgaaggtttcaattggcgaggatctaccct
atgagactcaaggtgtccatctccactgagacggcagagctagttccatcaccctgctgg
gatgtctctgccacaaaatacttgcacaatcttctaaaagtgtctactctggtggaggca
gtcctgtgtgagaccaatgctgattgcactgcagttgagttgtacttaaccatcaggaat
gtgaagatctgtgtgaatgatgatttagttgtaaagaaatttgcttgctattcaagtgag
aaggccattacagaggagcaaaatgagtctttagatcgatcgcttgtaagccttgcctgg
gacatgttctccagacctcagcagatcctggaaatgaatgggtgctgtacagtgaggtca
cattttccacgtgttgtgcccaaaaaggaaacagaacagctgggcctaacattgctagcg
aatcctccaatgtctgttgtgaaatcccctcatcccactgtggaagtttctgctatggaa
actaaaacagaaaccagtggtgtaagtgaagaagatgaatccacttggagccttgaaaaa
gatgactgcgttactggtaactctgaacagacagagaatacagaaggtgcccttgcagag
cagttgtctctaaagctgaacttaatcagggtcatgaagtttctgaatcccttctcacat
ctaaacttgattgaagagcctaatgaagctgatgagcagaaacagacctctcatggtgaa
tcagcagcagagaagagtgatttgaccctgtcccagtaccttgaagaagattctgctatc
tgccttgaaatggaaaaaactactaaatcaagtgcacagaatgactctgacctgagtcac
agtacttcaaacgacacctctacagaactgaaagagacagatttttctcaagagtcaaat
gccaaagaccagttatcctgtgccagactgctacagttactaaatccagatccattaaat
ttggacactgaatgtatcgaagacaatattgtgtgctatgagcccaccaggagaggggta
ttggtgcattcggcagtcactgtaaacccctgcagtaacctcagccttgcccccattact
gagcaatttcgaaagttcctgttgagaaggaagtacaatggaccaggccttgctgagagc
tatgcctggccttctgttgcacggggttgtgatacagtgttggttgtccacggtggaaat
gatcccctcacttacattccccctttactggctcagctgcagatggcctctgtgtttagt
gctcttaatacacggaaagggccaatagcagtgatcctttgtccaggctgggaaaaggtg
cagtatgtgttggatctgctggaggacagccaggctgctgcgagtctccaccctgctgct
gtgttgcttgggctgaagaaggatgaggccaaaaatgccaagatccagaaaaactgtcag
ttgttggttaccaccccctttagcctggctcggctgcttgaagtacactgcttcctgttc
cttagactctgccacctggttctggatgaagtgtctgagctctactcacgagcacctgat
cagatgtcagccatcttaaaacatttccgtgaagtggcaagggaaaagagtcttgagtgt
tcacagcagactgtcgctgtgagcaaccagtggagtcgagagttggatggcctgattacg
gagcacatggtcagcccctgtgttgttgtcactgttccagaagaagcagccgtgtatggc
ggagttcttcagacagtcctgttgtgtctggactgcaacaagacctcggtgatgctcagc
tctctggacttcagtccctctgttccccagaaaaccctcatcgtaacaaactcggttgaa
gaagtggagcatgtatacaaggctgtcagcaacacggcagcattctccttgaaagctcat
gaaggcctttcttaccagtttgactttgtggttgagcagtggaaaaaagacattggttca
ggcacccaggtcattttagtgaccactaatgattccatgaaggctcttggtatcagagat
gccacatgtgtggtgcattacgggttcccaggctcaccgaaactgtttgggaatcgattg
ttctgcatgtctgacaactttcagaatcaagctaaaaagagctcctctcctgtggtgcgg
tctgtaatgctgctgtcggagcgaaatgctcgtcatgtatctggagtgctgcgctacctg
aagcgtacttgtgctacactgcccccggagcttctgcagttctctgaaggagtccagcag
gccaaggaagagcaaaaaattggcagagcactctgcagccatttaaagagcctgggtttc
tgcagggagagtgcagtttgcccagacaggcatataatcaacagaacacttgatcatccc
ctccaccctgactcggggactgtccaggttttgcctctttacataaagagtgcaaatgtg
tactacggacgaattgtgagccagaaacaagaccagttcaaagacttggctgctgagatg
aactcacactatactgaagaaagagtttttgcaaaggatgtggtgaagggaggcctttat
gctgtacatgaggaggaagaatatcatagggtctgtgttactaaagtgccagataaagaa
gataaactgttcagcagtgtcacggctcattttattgatgatggctatgtacaggaagtg
aagtcacatcaacttttgcagcttccttctgagttccagagcttgcctggtcaagctgtg
gagataattttgtgcagggtgcaacccatcgatggagagatggactggaatccaaaggta
accagagccatcagtctgaagatcaagggaaagctacatcaagccaaactgataaagtgc
ttgggcagtactgtatgggttgatccaatgatccgtgtgacacgtgtgcctggcctgagc
agctttattaacgagtataatgtccacgatgagattattgcgactgggatgggcaccata
aactcacagcacctggagctgctgaagacactgtgctttggagaggaggcatctgcagca
gttgtgcctagtgggagtgaaagatgtgagagtgaggagctaagggttcaggctgctgaa
gaagctctggccagtaggatgaaggctgcatttcccagcctctgcagtgtagataaactt
actgctaactaccacagtgcagatatctgtgagccttcagaagtcatgaaaaacattagg
ccaactcagattacagtacctaatggagggttgagtatagccaccatggtagatgatggg
caaattgataggtcagtgcaaccaagattactacccctggtctggactgctgcagtatca
aacagttcacaaaaagaaactacaggtgaaaccgagatggctgaaattttgcacactgag
aaaagtgtggatcttgtacctcaaagttttcacccacagatcaagtggtttcaacgggaa
gagtctgtcactcttaaagtaaagcttgtcaaccccatgatgcagaagtgtgaatttttc
tctgacagagtgctttacagttcttatgtaagaagccgacgttactgcgctgatctagag
ttgcacagtgacatccggactgaacagtgcaaatgggaaatgaagtgcaatgagccagag
ataacactggtgaagaaggagaaaggattgtggaaatcacttctcaaatgcaagaatact
tttgtaagctatgactttgaccacattgaggatgaggacaagcctgctacaaatgattgc
tcgtttctggcaagcactggagaggtgggcatctatacaaattcaggaagtgggagtgat
agtgactga
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integrated database retrieval system
