Astyanax mexicanus (Mexican tetra): 103045484
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Entry
103045484 CDS
T05042
Symbol
frem1a
Name
(RefSeq) FRAS1-related extracellular matrix protein 1a isoform X1
KO
K23380
FRAS1-related extracelluar matrix protein 1/2
Organism
amex
Astyanax mexicanus (Mexican tetra)
Pathway
amex04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
amex00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
103045484 (frem1a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04091 Lectins [BR:
amex04091
]
103045484 (frem1a)
Lectins [BR:
amex04091
]
C-Type lectins
Lecticans
103045484 (frem1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin_3
Frem_N
Lectin_C
Calx-beta
CReP_N
Motif
Other DBs
NCBI-GeneID:
103045484
NCBI-ProteinID:
XP_022534044
Ensembl:
ENSAMXG00000002343
LinkDB
All DBs
Position
8:26479692..26526798
Genome browser
AA seq
2182 aa
AA seq
DB search
MTLQRRTFKSPFWLLLLLGLLHWTRGSLVKTNLGLKVKRGQSVFLQEGDLQFHIPREKDA
CKLEVVLNEPITQRVGTLSPQVFDCHYLVDEVKYTHNGCPILKEDTVKLRLYRFSETETY
SEVFSLHVEIMEPDCNIIKLGPQTLQVPEFYGLSNVLDGNIVSFNYEHRSNIECTVRVLT
PESHLPGHGQLVTGEPDKLEGPRGDEPDSFVSIRQQLDNKARANCKSESCLKGLKLVKIT
KVSCEEFLMMGIRYQHITPPSPDIDYIAIRLDLTDTRSRSIFQSEQAWIPVTIKGAVPNQ
LPKPAFMSMFILEVDQFILTPFSTAALDAIDAETPKNRLVFNITKPPSEGFITHLSDHTK
PISSFTWTDLNDMLISYQPPNSSHTQRRNYEVEFEVHDFYFEKSQPVMVHMSVRTADTNA
PRVSWNMGLSLLEGQSRPITWDQLQIVDNDDLKAVRIITVDGLQHGRLTLRGGKGFMFTV
SDIKAGVVRYHHDDSDTTKDFVIFRITDGRHQTRHKFPINILPKDDSPPFLITNMVLELS
EGQTALLRGSILQASDMDSSDDYIMFNITRPPQAGEIMKMPGPGITGHPVTRFLQKDIFH
SIIYYRHFGNEVFDDSFEVVLSDFHDPPNLSDPQSIVIQIQPVPDQPPQEVPGSSRYLVV
KETDVVYLTKQQLHFVDLESPDCELTYTVTTPPLFSTTYGGADAGRLFLVDSIPKFTKDP
NAPVLRLFTQHAVNYMKVAYMPPIHDIGPYPQHIAFVLSVTSQHGRTTTGICFNITVLPV
DNQTPEVHINQLTVDEGGECWVSVDHLQLTDMDSLEDSLRVEIKRRPQHGEVYLDGAPLS
QGQTFTVWDLKNLKVRYHHDSSESDQDSIECIATDGVNSVEFVLPIKVTLVNDEVPVVVA
DLKPLLECAEGQDVVITAEYIYATDADSDDSRLTYMIARQPFYGVVLRNGIVVDRFIQED
LKAGIITYKHTGEEIGLLPRHDTITFVISDGQSDLGPSCCYEKTQGFKGSPHLEDSLPVY
DLNITVYPMDNQPPSITIDAVFGVNEGGSASVSSTHLKVTDQDTLLEDLQLILISPPQFG
YIENILPTPGFEKSNMGISIASFSYRDVLNGHINYVQSRHQRIEPTADQFMLCVSDGKHQ
SSAKPFYIIINPTNDETPDFLARNFTVREGDMKELDPSIINAVDLDVPRDRLTFSIVQQP
RHGAIMGRLHGNEVAHYKRSAQKLGTEVYVQDFTMEDLRNGMALMYMHDDSESELDGFII
QLSDGKHQLQRHMLVKVLPVNDEEPHIIRNTGIEVEAGESRLISSAVLSAHDNDTPSSAI
IYVFESIPTHGLLQIKAGLDWVDVSAGMNCSQEDLDMNLLRYVHTAQPGSHTQDQFVFRL
QDGRNRSPAQHFHISLKELGKGDIALFVKPLRASRGEHIVITTDVLLAVDGADKPEELLY
VVTVPPAHGHVEYIKHTGFPIDSFSQLDVAANLVCYVHDNRATSPRETLQFVISNGKSTR
NGTLEILVEMTDRILPTLVQKTDLRVPQGSTITITPDNLQLTDPDTPPHSLIFRLVQPPQ
YGQLIVKGVSITAGSNFTQQNVQDLDVAYRHSGGASQIDRFIFTAADSTDRGFLVDGKVQ
REPAFFTIQIETLDSSAPRVMVLETLWKVELLKDGRYGIFISSRELKAQDANSADEDLIF
HILRVPFFGYLENATNGEFVRQRFTQRDLNRRNILYIINSAVEALTDSLEFAVSDPLGNT
GSAHKLEFSWARVELTKTEHSVCEGQGPLSLTIQRTGNMQDSSYITVKVKEITASVGKDF
MPAPSALIQFDPGMSTRQWRLELLQDSLEEAEEVFEVTVDSPVGSVLGGNIKATITILDS
RNGQCGEKPPQRGTALQGKEVPLGPYPKHGSIQLETLPITLGDVAVSTRGDDLPQIVPTI
SKKRLRTKGNGKNVPPSSVIRSGSEVVYTYNGIMSLTVEDDTAPLITGRTAEVQVTSRGQ
QRSLPARITQQRTARPTNTRKSSAAQIISRPVSKPCTPELRGFLHYNESLGQLLHCNGVS
WKAWAATDEAVNAQKCPQGWTYWSHQCYMSPEIKATWSEAARTCRESFQANLVSVVSKAD
MDWLWDFNERKPFWIGLNDREGKGRWEWVGGEPVTYTNWRQSPPRTRKKGNKKCVLVWKK
TKWQIRDCKTGRKQRYVCYVKT
NT seq
6549 nt
NT seq
+upstream
nt +downstream
nt
atgactcttcagagaaggacctttaaaagtccattttggcttcttcttttgctgggactt
ctgcattggactcggggctccctggtaaagactaatcttggtctaaaggtgaaaagaggt
cagtcggttttcctgcaggaaggagatctgcagttccatatacccagagagaaggatgcc
tgcaaactggaagtagttttgaatgagcccattacacagcgtgtcggcacactgtccccc
caggtttttgactgtcattatttagttgatgaagtgaagtacactcacaatggatgtcct
attttaaaagaagacacagtcaagcttcgactgtacaggttttctgagactgagacctac
agtgaagtgttctcacttcatgttgagatcatggagcctgactgtaatataataaagttg
gggcctcaaactctacaggttcctgagttctatggcctttccaatgtgctggatggtaat
attgtatcttttaactacgagcatcgatccaacatagagtgcacagttagagtgttgacc
cctgaatctcatctacctggacatggtcagctggtcactggggaacctgacaagttagag
gggccaagaggagatgagccagatagctttgtatctatccggcaacaattagataataaa
gccagagccaactgcaaaagtgaaagttgtttgaaaggcctgaagttggtgaagatcaca
aaagtgtcctgtgaagaattcttaatgatgggcattcgctatcagcacattactcctcca
tcccctgacattgattacattgctatcagactggaccttacagacaccaggagcaggagc
atattccagtctgagcaagcctggattcctgtgacaattaaaggtgctgtcccaaaccag
ctgcccaagccagcctttatgtccatgttcatcctggaggtggaccagttcatcctgact
ccattctctacagccgctctggatgcaatagatgctgagactcctaagaacaggctggtg
ttcaatataaccaaaccacccagcgaaggcttcatcacacatctgtctgaccacacaaag
cccatctcgtccttcacctggaccgacctcaacgacatgctcatcagctaccagcccccg
aattccagccatacgcaacgcaggaactatgaggtagagtttgaagtccatgatttctac
tttgagaagagccagcctgtgatggtacacatgtcagtcaggacagcagacaccaacgct
ccaagagtgtcatggaatatgggtcttagtcttttggaaggtcaatcacgtcccataaca
tgggatcagctccagattgtggataatgatgatttgaaggctgtgaggatcatcactgtg
gacggcttacagcatggaagactgactctcagaggtgggaaaggattcatgttcactgta
agtgacatcaaggctggagtggtgcgctatcatcatgatgacagtgacaccaccaaagac
ttcgtgatctttcggatcactgatggtcgccaccagaccagacataaattccccatcaac
atcctccccaaggacgacagcccacctttcctcattaccaatatggtgctggagctctct
gagggacagacagcactcctgagagggtcgatactgcaggcctcagatatggactccagt
gatgattacatcatgttcaacatcactaggcctcctcaagcaggagagatcatgaagatg
ccaggtcctggaatcacaggccatcctgtaacacgtttcctccaaaaggatattttccat
tccatcatctactacaggcattttgggaatgaagtgtttgatgactcttttgaagtggtt
ttatctgacttccatgatccaccaaatctctcagaccctcagagcatagtgattcaaatc
cagcctgttccagatcagccaccccaagaggtcccaggatcctcacgctacctggtagtc
aaagaaacagatgtggtgtacctgaccaagcagcagctgcactttgttgatctggagtct
ccagactgtgagcttacctatactgtcaccactccacctctcttcagcaccacctatgga
ggtgctgatgcagggaggctgttcctggttgacagcatcccaaaatttacaaaggatccc
aatgcccctgtgcttagacttttcacacagcatgcagtcaactacatgaaggtggcctac
atgccccctatccatgacatcggcccttaccctcagcacatcgcgtttgtgctctctgtg
acaagccagcatggacggaccaccacgggaatctgtttcaacatcacagtgctgccagta
gacaaccagaccccagaggtacacataaaccagctaacagtggatgagggaggagaatgc
tgggtaagcgtggaccacctgcagctgactgatatggactcactggaggactctctacgt
gtggagataaaaagaaggcctcaacatggagaggtgtatctggatggtgcccccttgagt
caaggccagactttcactgtttgggatctgaaaaacttaaaagttagatatcaccacgat
agttcagaatcagatcaagatagtatagaatgcatagcaactgatggagtgaattcggtt
gagtttgttctgcctattaaggtcaccctagtgaatgatgaagtgccagtggtggtggca
gatttgaagcctcttctggagtgtgcagagggacaggacgttgtgatcactgcagagtat
atctatgcaacagatgctgatagtgacgacagcaggctcacctatatgattgcccgtcag
cctttttatggcgtagtgctgagaaatggcatcgtggtagacaggtttattcaagaggat
ttaaaggctgggatcatcacctacaaacacacaggagaggagattggattgctccctcgt
cacgacactatcacgttcgtgatctctgatggacaatcagatctaggtccctcctgctgc
tatgagaaaactcaagggtttaaaggatcacctcaccttgaggactccctaccagtctat
gacctcaacattactgtttatcccatggacaaccaacctccatctattactattgatgca
gtgtttggggtgaatgaaggtggctctgcttctgtctcatcgactcatttaaaagtgact
gatcaggacacacttctagaggacctgcagctcattctgatctctccaccacagtttggc
tacatcgaaaacatcctgcccaccccagggtttgagaagagcaacatgggcatcagtatc
gcctcgttttcctacagggacgtgctgaatggacacataaactatgtgcagtccagacac
caacggattgaacccactgctgatcagttcatgctgtgtgtctctgatggcaaacaccag
tcctctgctaaacccttctacatcatcatcaatccaactaatgatgaaactccagacttc
ttggctaggaactttactgtccgtgagggagatatgaaagagttggatccttccattatt
aacgccgtggatctggatgttcccagagatcgtttaaccttcagcattgttcagcagccc
cggcatggtgctatcatgggtaggctgcatggtaatgaagtggcccattacaaaagatct
gcccaaaagcttggaactgaggtctatgtgcaagacttcacaatggaagatctcagaaat
ggaatggctctaatgtatatgcatgatgactcagagagtgagctggatggcttcattatt
cagctctctgatgggaagcaccaactacagagacacatgttggtgaaagtgttgcctgtc
aatgacgaggagccccacattattcggaatactgggattgaggttgaagcaggagaatct
agactcatttccagtgctgtcctcagtgctcatgataatgatactccttccagtgctatt
atctacgtgtttgagagcattcccactcatggcctacttcagatcaaggcaggcctggac
tgggtggatgtatcagcaggaatgaactgctctcaggaggatctggatatgaacctgctg
cgatatgtacacactgctcagcctggaagtcacacgcaagaccagttcgtcttccgtcta
caagatggacggaaccgttcccctgcacagcacttccacatctcactaaaggagctggga
aaaggtgacatagcattgtttgtaaagccactgcgagccagccgtggagaacacattgtg
atcaccactgatgtcctgctggctgtggatggtgctgataagccagaggagctgctgtat
gtagtcacagtgcctccagcacacggccacgtggagtacattaaacacactggctttccc
atcgactccttcagccagcttgatgtggcagctaatctggtgtgctatgtccatgacaac
agagctacgtcacccagagagacactacagtttgtcatcagcaacggaaaatccacacgt
aatggtactctagagattttggtggagatgacagacaggattctgcctacactagttcag
aaaactgatctacgtgttcctcagggttccaccatcaccataacccctgataaccttcag
ctgacggacccagacacccctccccattctctgatcttcaggctggtccagccacctcag
tatggtcaactgatagtgaaaggagtctcaataactgcaggaagtaactttacccagcag
aacgttcaggatctggatgtggcatacaggcactctggtggagcttctcagattgatcgt
tttatattcactgctgctgacagcactgatagaggcttcctggtggacgggaaggtgcag
agggaaccagcattcttcaccatacagattgaaactttagacagctctgcccccagagtg
atggtactggagactctgtggaaagtggagcttcttaaagatgggcgttatggaatcttt
atctcatcaagagagctgaaggctcaggatgcaaactctgcagatgaggacctcatcttc
catatacttagagtacctttctttggttacttggagaatgctaccaatggcgagtttgtg
cgtcagcggttcactcagagggatctgaacaggaggaatattctctatataataaactct
gctgtggaggctttgactgacagcctggagtttgcagtctctgacccactgggcaacact
ggatctgctcacaagttggagttcagctgggccagagtggagctgactaagacagagcat
agtgtgtgtgaaggccaaggacctctgtcactcaccattcagaggacgggtaacatgcag
gactcttcatatataactgttaaggtaaaagaaatcacagcatctgttggaaaggacttc
atgcctgctccctcagctttgattcagtttgatcctggcatgagcactcggcaatggagg
ctggagctgttgcaggattctctggaggaggctgaggaggtgtttgaggtgaccgtggat
tctcctgttggttctgtactgggaggaaacatcaaagccaccatcacaattctggattcc
agaaatgggcagtgtggtgagaaaccaccccaaaggggaacagctcttcagggtaaggag
gtaccgttagggccctacccaaaacacggctccatccagctggagactttacccatcact
ctgggagatgtggcggtcagtaccagaggtgatgatttgcctcagattgttcctaccatc
tctaagaaaagactgagaactaaagggaatggaaagaatgttccgccttcttcagtcatt
cgaagtggatctgaggttgtttacacttataatggaatcatgtcactgacagtggaggac
gacactgcacctctcatcactggaagaacagctgaggttcaagtgaccagtagaggacag
cagcgttcacttccagccagaatcacacagcagcgcacagcacggcctacaaacacccgt
aaaagctctgcagctcagattatttccagacctgtctctaaaccctgcactccagagctg
agaggtttcctccattataacgagagcttgggtcagctgctccactgcaacggagtctcc
tggaaagcctgggctgctactgatgaggcagtgaacgctcagaagtgtccacagggatgg
acgtactggagccaccagtgctatatgagtccagagattaaagccacatggagcgaggct
gctaggacgtgcagagagagcttccaagcaaacctggtcagtgttgtatcaaaggcagat
atggactggttgtgggactttaatgagaggaagcctttctggataggcttgaatgaccgg
gagggtaaaggtcgttgggaatgggtgggcggagagcccgtcacttacaccaactggagg
cagagtcctcctcgaacccggaagaaagggaacaagaaatgtgttttggtctggaagaag
acaaaatggcaaatacgagactgcaagacaggaagaaagcagcgctatgtttgctacgta
aaaacatga
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integrated database retrieval system
