Astyanax mexicanus (Mexican tetra): 103045574
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Entry
103045574 CDS
T05042
Symbol
utp20
Name
(RefSeq) small subunit processome component 20 homolog
KO
K14772
U3 small nucleolar RNA-associated protein 20
Organism
amex
Astyanax mexicanus (Mexican tetra)
Brite
KEGG Orthology (KO) [BR:
amex00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
amex03009
]
103045574 (utp20)
Ribosome biogenesis [BR:
amex03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
103045574 (utp20)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UTP20_N
UTP20
UTP20_C
DUF4058
Motif
Other DBs
NCBI-GeneID:
103045574
NCBI-ProteinID:
XP_007252784
Ensembl:
ENSAMXG00000021039
LinkDB
All DBs
Position
2:complement(14417082..14462627)
Genome browser
AA seq
2810 aa
AA seq
DB search
MRLKVKPLSHKSENTFRFRSFSERLANVNIDVIHRIDRTGSYAEEVDTYFFEGLTKWKDL
NLTQHFLMFRREVMNKSQSFNMLVFHQNAIVESLKTHLAVKNSLAFEPLLDLVVRLARDL
QTDFYPHFPDFFIIITSILETQSTEVLEWSFTCLSYLYKYLWRLMVKDMERIYGLYSKLL
AHKKEHIRNFAAESFSFLMRKVPDFDALFTLMFKDLEQHPQKAKGVGRLIFEMCKGVRKM
FHSCANTALPVVLWKLGPAEDGDADLPWDAVKEALDQMAESSANYVEKENFLVLWDSLQS
CMKDVLPKLEAGDQSQASEHLERILFIYHTLIDHRKGARITKPESVCETLELLVQTKGMS
YSCCQLLLQVVSLFLLGENVSVPASLAQELVKKVFISGMDQDLILDFSEEMFDMKQFEQL
FLPSLLQFVEQLFCSMHTVSRLRALQLLVRLILAKAHPPTDGSMAFEKYPLVFTGQSAGL
DQAQTETRSVPQLILSLIDVDEEKPLSDLSQLWAALVLLPHIRPLEETSVIPPLAALLNR
LLNEVLSEKLGRGGLFVARQALSTLLSFKETAEISSLLPDELIRRIIEKFPTDLSALLLL
DLYYTRLLLNGCSAQLSHSSLLELYQILQTNFSSNVSKIRLLTLRIMSHFEAELPKPAEG
EDSSSMQTVFAICLQAEQIPATVQDYREKLLHLRKLRYDLVQPCLPQGPFKQVPLRYLIA
MLFINFQPLWEAVIDLITSYARDMDNKEFWKIFYEHLELVAGLAENELQAEDEEDDDEAG
DQSKVSFGTREQGMDVIESGDVGVLFLEQLEQTSSPNDRTDFTNFRSLLWKAMAKFPDRV
EPRSRDLSPLLLRFIRNEFYPADLLVAPAQNLTKRRCSSSDKDQPEAENEDVHMKEEEED
EEEQEEESKQRKKIPRRAAAKQLIAHLKVFSKFSNPRALYLEPDLHNLYTQLLCHKDQQI
QKAALDCMMTYKDQDIVPYKENLERLLDDRHFKDEIVQFNISEEGSVVLELHRPKLIPML
MRILYGRMRTKAGNKFQGKAVAATRSAIVLRFLAGCQPEELAMFMDLLLEPVCHYSQGAC
LAAVEKAVAETDLSAVLPLGRQHGLLNVIDVVIKKLGHLIRFYLPKLLQMVLCVTASVSC
LLDHREQLKAGCINPLKNLRRLGLLRIQEFFDSFDSYSFTADELDAVFHSVIWPQVCRLP
TESPYAPTPLLRLVHVWSQNSRYFPLLAKQRPDHPECDVLLNVFALLSAKNVSPSTASMV
MDICESLLNTPDFVPSEAETELSVNQCVIPESDITTDSLTVGSKLLLPHIPTLLRYLSGA
VQNSDRMKKKNLRVQVSKELNILSKISRFVSDKEQSSTLITLLLPYLYKQIVEETQIDIL
GTVHNLLKQCSEPIVFLKPLSKLFSVIHSKLPRQALCDIFKTLAELHGELKYITDVVVEL
NSFDSRHLDEIHFDVRLLAFQKAIKHIGQMSVLDMRYLTAVMHNCFHSFQIGDMSLADTS
TLCLSAVIKQLAAVGCPEQEYREIVHQTVLDAVRRGLKSKTESVRNDYTTVLADLVKTFP
TRSEFRELVQLTNYTDPESDFFEHMKHIQVHRRGRALRKIAKQLTEGTVVMSCRSMQNYI
MPYATIALFDPKLLKNEAMVSAVIDVVGAVCKRLTWSKYLYYLKYFIHVLQMGLVEQKLA
VSLLVTVLEAFHFDHATLSKEVEAAKNKKADDPSAMDGGAEDEDPAMDSDESDAEDVMET
TEADADAKAVEETETMDTDGTESAKSKKDKDKDKKSQTKSAPPVPNSGLPKSKEDLEALI
STIHNTVNQSVLPKLHKCLTAKVKKDDEHKSVKSKDVKDEEVVRVPIAFAMVRVMQSLPV
EVMESNLPGVLLKVCIHLRSRFQEIRDVARNTLIKIIEALGHRYLQYLLKEMQGVLVNGY
QIHVLTYTVFQLLMILKPSLNAGDLDPCMDILTEIFHNELFGALAEEKGVRGIVSKVMEA
RHSKSSDSYELLAQFCSQDHVTKLIVPLKGVLEKTVSLKVSRRVNGVLRKIVGGLLQNQS
MTPQTILLLSHGLVSQSLPLITSKNQKKQRPPPDPRLPPPSCLLLPPTPKRGGEKAAVSS
KTNMHILVDTGLNLLHSSLKSSKINSSVSSVLEMLDPFVALLLDCLSSMHVQVITEALQA
FIWVLKFPLPSINEKADELTKQLFVLLKDYAKAGAGRGENFELVQNCFKAISVLVKSVKH
SISDTQLQVLLGYAEEDIYDNSRRATAFGLLRAILSRKLVVPEMEEAMKKVAKLSVNGST
DEVRVRCRQIYLKYLMDYPLGKKLRSHFDFIVAQLNYEYDTGRQSALEMMTFIFQTFPQP
LLLEHCGLFFVPLSLAMVNDDSARCKKMAALTIKTLLDKLDVKHRNSMFTLVNSWLTGEK
MALRRLGAQVCGLFVEVEGEKFNLRLDSLLLLIEKEINTANFEDIEEEEDEKAADRLLFC
YLTLITKLIKDCDFLELHKPADTLNKIWGHVEAHLRHPHSWVWLTASQVFGLVFAAQKPE
ELLALWHPHEKTPKPELPVAFSFLATNLDKKMRELVLSFCHQLQSKYLDIAAGEQVVKNL
LFVAKVIYLISPESDSVVNGAENGETEDDKQGEKEEEEEDEKDEEEQQQEQDTEKQDENR
PPSLLWVMKKLTLLAKREAALTPKVPLKRTCVFKFLGAMAVDLGKERLGPYLTTILAPLF
RELDSTYADQDPTLKNLAQELIELLKKVVGLENFSLAFAAVQKEATQRRASRKKHRALQA
VSNPDVAARKKIKKHQKKDVAKKRKIAVLQPGHKPKKHKSSSIRDLAMVQ
NT seq
8433 nt
NT seq
+upstream
nt +downstream
nt
atgaggctgaaagtaaaacctctgtctcacaaatcggagaacactttccggtttcgttct
ttttctgagaggctcgcaaatgttaacatagacgtcatccatcgcattgatcggacggga
agttatgcagaggaagtagacacttactttttcgaaggcttaacaaaatggaaggaccta
aatttaacacaacacttcttaatgtttcggagggaggtgatgaacaagagccagtccttc
aacatgttggtctttcaccaaaatgcgatagtggagagtctgaagactcatttggcagtg
aagaacagcttggctttcgagcctcttctagatcttgtggtgcggcttgcccgggacctc
cagacagacttttacccccactttcctgacttcttcatcattatcacctccatcctggag
acacagagcacagaggtgctggaatggtcctttacctgtctgtcctacctgtacaagtac
ctgtggagactgatggtcaaagatatggagaggatatatggtctttatagtaaactcctg
gcccacaagaaagaacacatccgcaactttgctgctgagagtttctcctttttgatgaga
aaggttccagattttgatgctttgttcacactaatgttcaaagacctggagcagcatcct
cagaaggcgaagggagtgggaaggctcattttcgagatgtgcaaaggagttcgcaaaatg
ttccactcttgtgccaatactgctttgccagtggttctgtggaagcttggtccagctgag
gatggagatgctgatcttccctgggatgctgttaaagaagctctagatcaaatggctgaa
tcttcagccaactatgttgaaaaagagaacttcttggtcctttgggattctttacagagc
tgcatgaaggatgtgctgccaaagctagaggcaggtgaccaaagccaggccagtgaacac
ttggagaggatcttgtttatttaccacacattaatagatcaccgaaaaggagccaggatc
accaagccagagtctgtctgcgagacgctggagttactggtacagacaaaaggcatgtcc
tactcctgctgccagctgctgctacaagtggtctccttatttctactgggagagaatgtg
tctgttccagccagtctggctcaagagctggtgaaaaaggtcttcatcagcggaatggat
caggatctcattttggatttttctgaggagatgtttgatatgaagcagtttgaacagctg
tttctgccgagtctgctgcagtttgtggagcagctgttctgcagtatgcacacagtgagc
agactacgtgctcttcagctgctggtcagactgatcctggctaaagctcatccgcccact
gacggctccatggcttttgagaagtacccactggtctttactggacagtctgcaggtttg
gatcaggcccagaccgagaccagatctgttcctcagctcatcctctctctcatagatgtt
gatgaggagaagccactgtctgatctctctcagttgtgggcagctctggtgcttctgccc
cacatcagacccctggaggaaacgagtgtgatccctcctctcgccgctctcctaaacaga
cttctaaatgaagtgctcagtgaaaaactgggcagaggagggctgtttgttgccagacaa
gctctgagtaccctgctgagctttaaggaaactgcagaaatatcatctctgctcccagat
gagctcatcaggcgcattatagagaaattccctactgatctctctgcactgttgctgctt
gacctgtactatactcggctgttactcaatggctgctccgcccagctatcccacagttcc
ttgctagaactgtatcagattttgcaaaccaacttctcttccaatgtctccaagattcgc
cttctgacactgagaattatgtcacactttgaagcagagcttcccaaaccagcagagggg
gaggatagctcaagtatgcagactgtatttgccatctgcctgcaggctgagcagatacca
gccacggtgcaggactacagagagaagctcctgcacctgcgcaaactccgttatgacctg
gtgcagccctgccttccacagggaccctttaaacaggttccactgcgatatcttattgct
atgctgtttatcaattttcaacctttatgggaagctgtgattgatctaatcacgagttat
gccagagacatggacaacaaagagttctggaagatcttctatgaacatctagagctggtt
gctggactggcagagaacgagctgcaggctgaggatgaggaggatgatgatgaggctggt
gatcagagtaaagtctcatttgggacacgggagcagggcatggatgtgatagagagtgga
gatgtaggagttctgtttctggagcagttggagcagacgagcagtccgaacgaccgcaca
gacttcaccaacttccgcagcctgctgtggaaagctatggccaagtttccggacagggtg
gaacctcgtagccgagacctcagccccctgctgcttcgctttatcaggaatgagttctat
ccagctgaccttttggtggctcctgctcaaaacctgacgaagaggcgctgctcttcatca
gacaaagaccagcctgaggcagaaaatgaagatgtgcacatgaaagaggaagaggaagat
gaggaagaacaggaggaggagtccaaacaacggaaaaaaataccaagaagagctgcagca
aagcaacttatcgcacacctgaaggtcttctccaaattctccaaccccagagctttgtac
ctggaaccagatctacataatctttacacacagctgttgtgtcacaaggaccagcagatc
cagaaagcagccctggactgtatgatgacctacaaagatcaggacatcgtcccttacaaa
gagaatctggagagactgctggacgacagacatttcaaagatgagatcgttcagttcaac
atctctgaggaaggatcagtagtgctggaattacaccgccccaaactcatccctatgctc
atgaggatcttatatggacggatgcgcaccaaggctggtaataaatttcagggtaaagct
gtggctgccacacgatctgccatcgtactgcgcttcctggcaggctgccagccggaggag
ctggccatgtttatggacctgttactggaacccgtctgccactacagccaaggagcgtgc
ctggctgcagtagaaaaggctgtagctgaaacagacctctctgctgttcttcctctgggt
cgccagcatggcctgctgaacgttatcgacgtggtgatcaaaaaactgggccacctcatc
cgcttttacctgcccaaactgctgcagatggtgctgtgtgtgactgcctccgtttcctgt
ctgctggaccacagagaacagctgaaggctggctgtataaacccgctgaagaacctaaga
agactgggtctgctgcgcattcaggaattctttgacagctttgattcctacagcttcact
gctgatgaactggatgctgtgttccactctgtgatctggcctcaggtttgccgtttgccc
acagagagcccgtacgctcccacacctctcctcagactcgtacatgtctggagccagaac
tccagatatttccctttgctggccaagcagagacctgaccacccagagtgtgatgttttg
ctcaatgtcttcgccctgctgtctgccaagaatgtctctcccagcacagcatctatggtg
atggacatctgcgagagcttgctgaacacgccagactttgtaccatctgaggctgagaca
gagctgagtgttaaccagtgtgtgatcccagagtctgatatcacaacagactctttgact
gtgggttcgaagctgctcctaccgcacattcccaccctgctgcggtacctcagcggagcc
gtgcagaactcggatcgcatgaaaaagaagaacctccgagtccaagtcagcaaggagctc
aacatcctgtccaagattagcaggtttgtcagtgacaaagaacagagctcgaccctcatc
accctgctgctcccgtacctctacaaacaaattgttgaggagacgcagatcgacatcctg
ggcacggtgcacaatctgttgaagcaatgctcagagcccatagtcttcctgaagcctctg
agtaaactcttctcagtcatccacagcaagctgccccgccaggccctgtgcgacatcttc
aagactctagcagagctgcatggtgaattgaagtatattaccgatgttgtggtggagctc
aactcatttgacagccgtcacctggatgagatccacttcgatgtgcgtctgctggctttt
cagaaagccattaaacacatcggacagatgagcgtgctggacatgagatacctcacagct
gtcatgcacaactgcttccactcatttcagattggggacatgtctctggcagacacctcc
accttgtgtctgtcggctgtaattaagcagctggctgcagtgggctgccctgagcaggag
tacagggagattgtgcatcagactgtgctggatgcagtgaggagggggctgaaaagcaag
acagagagtgtgaggaacgattacaccacggttctggctgatctggttaaaaccttcccc
acccgctcagagttccgggagctggtgcagctcaccaactacaccgacccagagtccgac
ttcttcgaacacatgaagcacattcaggtccacaggagaggacgggcactccggaagatt
gccaagcagctgactgagggcacggtggtgatgtcctgtcgctccatgcagaactacatc
atgccatatgccacgatcgctctgtttgaccccaagctgctaaagaatgaagccatggtg
tccgcagtaatagatgttgtgggagcagtgtgcaaacgcctcacctggtccaagtacctc
tactacctcaaatacttcatccatgtgctgcagatgggtctagttgagcagaaactggct
gtgagtttgctggtgactgttctagaagccttccactttgaccatgcgactctgagcaaa
gaagtcgaggcagcaaagaataaaaaggcagatgacccaagtgctatggacggaggagca
gaggatgaggatccagccatggattcagatgagagtgatgctgaggatgtcatggagacc
actgaagctgatgctgatgctaaagctgttgaagagacagagaccatggatacagatggt
actgaatctgccaagtcaaaaaaagacaaagacaaagacaaaaagagtcagacaaagagt
gcacctcctgtcccaaacagcggccttccgaagagcaaagaggatctggaggctctcatc
tccaccatccacaacactgtcaatcagagcgtcctgcccaagctgcacaagtgcctcaca
gccaaagtgaagaaagatgatgaacataaatcagtgaagtcgaaggacgtgaaggacgag
gaggtggttagagtgcctatagcctttgccatggtccgagtcatgcagtcccttccagtg
gaggtcatggaatccaacctgcctggtgtgctcctcaaagtgtgtatccacctccggagc
cgattccaggagatccgtgatgtcgcccgaaacactctgatcaagatcatcgaggctttg
ggacatcgctacctgcagtatcttctgaaagagatgcagggtgtgcttgtaaatggttac
cagatccatgtgctgacctacactgtgtttcaactgcttatgatcctgaaaccatccctg
aacgcaggagaccttgatccttgcatggacatactaacagagatcttccacaatgaactt
tttggtgctcttgctgaggagaaaggtgtccgaggcattgtctccaaggtgatggaggcc
cgtcacagcaagagctcagactcctatgaactgttggcccagttctgcagtcaggaccat
gtcactaaactgattgtgccactcaaaggggtgctggagaaaacagtcagtctgaaggtg
tccagacgagtaaacggtgttttgaggaaaattgttggaggtcttctgcagaaccagagc
atgacgcctcagaccattctgctgctgagccatgggctggtcagccagagcctgcccctc
atcaccagcaagaaccaaaagaagcaacgccctcctccagaccctcgtctgcctccaccc
agctgtctactgttacccccaaccccaaagagaggaggcgagaaagcagctgttagcagc
aagaccaacatgcatatcctggtggacactggacttaatctgctccactctagtctgaaa
agttctaagatcaactcctcggtttcatcagttctggagatgttggacccatttgtcgct
cttctgctggactgcctcagttccatgcatgtccaggtgatcacggaggctctgcaggcc
tttatctgggtcctgaagttccctctgccttctattaacgagaaagctgatgagctcacc
aagcagctctttgtcctgctgaaggattatgctaaagcaggcgcaggacgaggagagaac
tttgaacttgttcagaattgctttaaggccataagtgtcctggtgaagagtgtgaaacac
tccatctctgacacacagctgcaagtgctgctcggatatgcagaggaggacatctatgat
aattcacgtcgagctactgcatttggactgcttagggcgatcttgtccaggaaactggtg
gttccagaaatggaggaggcgatgaagaaggtggccaaactgtcagtaaatggatcaact
gatgaagtgcgggtacgctgcagacagatctatctaaagtatcttatggactatcctctg
gggaagaagctgaggagtcattttgacttcattgttgctcagctcaattacgagtacgat
actggaagacagtccgctctcgagatgatgaccttcattttccagacatttcctcagcct
cttcttctggagcactgtggtctgttttttgtgcccctctcgttggctatggtcaacgat
gactcggcccgctgtaagaaaatggccgccctcaccataaaaacattattggataagctc
gatgtgaagcatcggaactccatgtttactctggtcaacagctggttaactggagagaag
atggctctgagaaggctgggagctcaggtgtgtgggctttttgtagaagtggaaggagag
aaatttaacctcaggttggattccctacttcttctcatagagaaagaaatcaacacagct
aactttgaagatatcgaggaagaggaagatgagaaagctgccgacaggttgctcttctgt
tatctcacgcttatcaccaaacttattaaggactgcgacttcttggagctccacaaacct
gccgacacgctgaataaaatctggggacatgttgaagctcacctgcgccaccctcactcc
tgggtgtggctaaccgcttctcaggtctttggcctggtgtttgcagcacagaaacctgag
gagctgctggctctgtggcatcctcatgagaagacccctaaacctgagctgcctgtggcc
ttctcttttctggctaccaacctggacaaaaagatgagggagctggtcttgtcattctgt
caccagctgcagtcgaagtatctagacattgctgctggtgaacaggtggtgaagaacctg
ctcttcgtggccaaggtgatctaccttatctcacctgagtccgattctgtagtgaatggg
gcagagaatggagagacagaggacgataaacaaggggagaaggaggaggaagaagaggat
gagaaagatgaagaggagcagcaacaggaacaggatacagagaagcaagatgagaatcgg
ccgccctctctgctctgggtgatgaagaagctgacgctgttggctaaaagagaagcagct
cttacacctaaagtgccactgaagagaacatgcgtgttcaagttcttgggggccatggct
gtcgacctgggcaaggagcgccttggtccttatctcaccaccatccttgctcctctcttc
agagaactggacagcacatatgctgaccaagatcccacactgaagaacctggcccaggaa
ctcatcgagctgctgaagaaggtggtgggtctggagaatttctcacttgcttttgctgct
gtacagaaggaggccactcagagacgagcctcacggaagaaacacagagccctgcaggct
gtctccaatcctgacgttgctgctagaaagaagatcaagaagcaccagaagaaagatgtg
gctaaaaagagaaaaattgcagttttgcagccaggacacaaaccaaagaagcacaaaagc
agctccatcagagacttggctatggtgcagtga
DBGET
integrated database retrieval system
