Astyanax mexicanus (Mexican tetra): 103045622
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Entry
103045622 CDS
T05042
Name
(RefSeq) E3 ubiquitin/ISG15 ligase TRIM25-like
KO
K10652
tripartite motif-containing protein 25 [EC:
2.3.2.27
]
Organism
amex
Astyanax mexicanus (Mexican tetra)
Pathway
amex04622
RIG-I-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
amex00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
103045622
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
amex04121
]
103045622
Enzymes [BR:
amex01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
103045622
Ubiquitin system [BR:
amex04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
103045622
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SPRY
zf-RING_UBOX
zf-C3HC4_4
zf-C3HC4
zf-B_box
RING_XB3-XBAT31
zf-C3HC4_3
PRY
zf-RING_2
ANCHR-like_BBOX
zf-RING_5
zf-C3HC4_2
zf_RING_Vps8
zf-UBR
AAA_16
Motif
Other DBs
NCBI-GeneID:
103045622
NCBI-ProteinID:
XP_049318949
Ensembl:
ENSAMXG00000021388
LinkDB
All DBs
Position
13:52410725..52415204
Genome browser
AA seq
588 aa
AA seq
DB search
MQRSAARTGRTGSGVGVGFQSVSSCCWRYRSGSNDRARMNHRKESLELELSCAVCLQLYD
DPVSLPCGHSYCLQCVRSVQESQQTGGRPGGRPRCPECRQDYNGLESLLKNFKLGGIVER
YREAMSEQVLTAGKPTVPCDQCLDGAEPAVKTCLHCETLLCEGHLKRHQERHRSKGHTLV
EPLPDLDQRRCPDHRGELEFLCLQERRFLCNECVMEGKHVEHEVQMLEAAKSDLVLVVEG
LEKATSDRLQLTEALLRRAQERGMNSGVCTEVLSARATELLDNMVTLISEYKERMRNLLE
EEVREYDRAWQASVGTLKEYQQQLSSTQRLANDLLLTSPSNFLFLKLYIKQEPQLRQAAG
VTVPCLPIPQPADTKHLRTSLGTDTFRTDLTQLLQSLHALMNPLNLSFNPATVHSSLILS
TDFLTVKHWGGGRPSFTSGDQSERFCTSTQVMCSQALSSGAHVWTVEIGTGTMWSIGVCY
ASIPRKGDHSRIGHNAVSWRLQWKNKKLTACHDSISTTVTETPTVPPKRLEVALDYDKGT
LAFYNLAAKGRKLHLHTFRAMFREPLYPVFGLHSTTDESWITLLNAAI
NT seq
1767 nt
NT seq
+upstream
nt +downstream
nt
atgcagcgttcagctgctagaactggtcggaccggttccggtgtcggtgttgggtttcag
tcagtttcctcatgctgctggaggtacaggagtggcagtaacgacagggcgaggatgaac
caccggaaggaaagtctggagctggagctgagctgtgccgtgtgtctgcagctgtatgat
gatccagtgtctttaccgtgtggtcacagttactgcctgcagtgcgtccgctccgtccag
gagtcccagcagaccggcggacgacccggcggacgacctcgctgccccgagtgccgccag
gactacaacggcctggagtctctgctcaagaacttcaagctcggtgggattgtagagcgc
taccgcgaggccatgtccgaacaagtgctgacggcggggaaaccgacggtgccgtgcgat
cagtgcctggatggcgcagagccggcggtgaagacctgcctccactgcgagacattgctg
tgcgaaggtcacctgaagcgacaccaagaacgacacaggtcaaaaggtcacaccctggtg
gagccgctgccggacctggaccagcggaggtgtccggatcaccggggcgagctggagttc
ctgtgcctgcaggagcgtcgcttcctgtgtaacgagtgcgtgatggaagggaaacacgtc
gagcatgaggtccagatgctggaggcggcaaagagcgacctggtgctagtggtggagggg
ctggagaaggccacgtcggaccggctgcagttgaccgaggctctgctccggagggcccag
gagcgcgggatgaactcgggggtctgtacagaggtcctgtcggcccgggcaaccgaactg
ctggacaacatggtgacgctgatctcagagtacaaggagcgaatgcggaacctgctggag
gaggaggtccgtgagtatgaccgggcgtggcaggcgagcgtcggtaccctgaaggaatac
cagcagcagctcagcagcacccagcgcctcgccaacgacctgctgctcacctccccatcc
aacttcctgttcctgaagctgtacattaaacaggagccacagctccgccaggccgccggc
gtcaccgtcccctgcctccccatccctcaacccgccgacaccaagcacctccggactagc
cttggtaccgacaccttccgcacagacctgacccagctgctccagagccttcatgcccta
atgaacccgctaaatctcagcttcaaccccgcgacggttcactccagcctcatcctgtcc
accgacttcctgacagtaaagcactggggtggtggacggcccagcttcaccagcggagac
cagagtgaacgcttctgcacctccactcaggtcatgtgttcccaggcgctgtccagtggc
gcccacgtgtggacggtggagatcggcacgggtaccatgtggtccatcggtgtatgctac
gctagcatcccgcgcaaaggtgaccacagccggatagggcacaatgccgtctcctggagg
ctccagtggaaaaacaagaaactgacggcctgccacgattccatcagcaccaccgtgacg
gagacacctacagtaccccccaagaggctggaggtggcgctagattacgataaaggaacg
ctggctttttataatttggcagcaaaagggaggaaactgcatctccacacgttcagagcc
atgttcagagaaccgctgtaccccgtgttcggactgcactccaccaccgacgagtcctgg
atcaccctgctgaatgcggccatttga
DBGET
integrated database retrieval system