Astyanax mexicanus (Mexican tetra): 103046084
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Entry
103046084 CDS
T05042
Symbol
sox6
Name
(RefSeq) transcription factor SOX-6
KO
K09269
transcription factor SOX5/6/13 (SOX group D)
Organism
amex
Astyanax mexicanus (Mexican tetra)
Brite
KEGG Orthology (KO) [BR:
amex00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
amex03000
]
103046084 (sox6)
Transcription factors [BR:
amex03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
103046084 (sox6)
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
HMG_box
HMG_box_2
Motif
Other DBs
NCBI-GeneID:
103046084
NCBI-ProteinID:
XP_022525824
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Position
5:38409956..38670676
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AA seq
823 aa
AA seq
DB search
MPSSAEVLTGRQQGGRAAAERLEAAAEEEEKDSLRIMSSKQATSPFASGPDGGEDGMNPE
HLGWEKDESAEALAAPQLPLHNLLHGKSHPDELPPVSSSVPPESDWDSLVSAQQCMEPDS
NKVCSLYSFRNNSTSPHKPEEGARERGDLLGSSAFGTPERRKGSLADVVDTLKQKKLEEM
TKTEQDETSCMEKLLSKDWKEKMERLNTSELLGEIKGTPESLAEKERQLSTMITQLISLR
EQLLAAHDEQKKLAASQMEKQRQQMELARQQQEQIARQQQQLLQQQHKINLLQQQIQVQG
HMPPLMIPIFPHDQRTLAAAAAAQQGFLFPPGMSYKPGDNYPVQFIPSTMAAAAASGLNP
LQLQQLYAAQLASMQLSPGAKMPPLQQPPNSAGPLSPGPKSEKRSSSPLAQVKEEGTQPL
NLSARPKTAEPVKSPTSPTHSLFPGSKTSPNNVSRGGGIPSPLGSLGRGSSLDILSNLNS
TALFGDQDAVMKAIQEARKMREQIQREQLQHHQQGMEAKLSALSGLGLNNCRTDKERAHF
ESLGHHLGKLGEDGKIGQRVIDLTRPEDLDGNKELNGFADKTHQYYCWPTGGASTTEARV
FRESRGRNPNEPHIKRPMNAFMVWAKDERRKILQAFPDMHNSNISKILGSRWKSMSNQEK
QPYYEEQARLSKIHLEKYPNYKYKPRPKRTCIIDGKKLRIGEYKQMMRSRRQEMRQFFTV
GQQPQTQLPISTSAGVVYPGAITMATTTPSPHMTSDCSSNSASPEPAIPVIQSTFGMKME
PGTMVPSDPVNGEDEMDMYEDFEDEPKSDYSSENETQEPVSAN
NT seq
2472 nt
NT seq
+upstream
nt +downstream
nt
atgccatcaagtgctgaagtgttgaccggaagacagcagggaggccgggcagcggccgag
cgattagaggcagcggcggaggaggaggagaaggacagtctcagaatcatgtcttccaaa
caagccacctctccgttcgcctcgggcccagacggcggcgaggatggaatgaatccggag
catctgggctgggagaaggacgagagcgcggaggctctggccgcgccccaactgcccctc
cataacctgctgcacggcaagtcccaccccgacgagctgccccccgtcagcagcagcgtg
ccccccgaatcagactgggacagcctggtgtcggcccagcagtgcatggagccggacagc
aataaagtatgttccctgtactccttccggaataactctacctctccacacaagccggag
gagggggcgcgggagcgcggcgacctgctgggcagctctgcgttcggaacgccggagcgc
cggaaaggcagcctggccgacgtggtggacacactgaaacagaagaagctggaggagatg
acaaagacagagcaagacgaaacctcctgcatggaaaaactgctttctaaagactggaaa
gagaagatggagagactgaacacaagcgagcttttgggagaaattaaaggtactccagag
agtctggcggagaaggagaggcagctttccaccatgatcacccagctgatcagcctgagg
gagcagctcctggccgcccacgacgagcagaagaagctggccgcctcgcagatggagaag
cagcggcagcagatggagctggctcgccagcagcaagaacaaatcgccagacagcagcag
caactgcttcagcagcagcacaaaatcaacctccttcagcagcagattcaggtccagggt
cacatgcctccgctcatgatccccatttttccacacgaccagcgcactctggctgctgcc
gccgctgcccagcagggcttcctcttccctccaggcatgtcctacaaaccaggtgataac
tacccggtgcagttcattccttccacaatggcagctgccgcggcgtcaggactcaaccct
cttcagctccagcaactgtacgccgcccagctggccagcatgcagctatcgccaggagcc
aagatgccgccgctgcagcagccccccaactcggccgggcccctgtcgccgggtcccaag
agcgagaagagatcctccagccccctcgcccaagtcaaggaggagggaacccagcctctc
aacctctccgcccggcccaagacggctgaaccggtcaaatcccccacgtccccaacacac
agcctgttccccggcagcaagaccagccccaacaacgtgtccaggggcggaggcatcccc
agccccctcggaagcctgggtcgtggctcatcccttgacatcctgtccaacctgaactcc
acggcactgttcggagatcaggacgcggtgatgaaggccatccaggaggcgaggaagatg
agggagcagatccagcgggagcagctgcagcaccaccaacaaggcatggaggccaagctc
tcggccctgtccggcctgggtctcaacaactgcaggactgacaaggagagggctcacttc
gagagtttgggtcatcatctgggaaagctgggtgaagacggcaagattggccaaagagtc
attgacctgaccaggccagaggatctcgacgggaataaggagctgaatggctttgcagat
aaaacacatcagtattattgttggccaacaggaggcgccagcaccacagaggcccgggtc
ttcagggaatcccgtggaaggaaccccaacgagcctcacatcaaacggcccatgaacgcc
ttcatggtgtgggccaaggacgagcgtcgcaaaatcctgcaggccttcccagacatgcac
aactccaacatcagcaaaatcctgggttctcgctggaagtccatgtctaaccaggagaaa
cagccctactacgaggagcaggcccgcctgagcaagatccacctggagaagtaccccaac
tacaagtacaagccgcggcccaagcgcacctgcatcattgacgggaagaagctgcgcata
ggcgagtacaagcagatgatgcgctcgcggaggcaggagatgcgacagttctttaccgtg
gggcagcagccacagactcagctccccatcagcaccagcgccggtgtggtctaccctggc
gccataacgatggcgaccaccacgccctcgccccacatgacctcagactgctccagcaac
tcagccagccccgaacccgccatccccgttatccagagcaccttcggtatgaagatggag
cccggcaccatggtgcccagcgacccggtcaacggcgaggacgagatggacatgtacgag
gactttgaggacgagcccaaatcggactacagcagcgaaaacgagacacaggagcccgtc
agtgccaactga
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