Astyanax mexicanus (Mexican tetra): 103046210
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Entry
103046210 CDS
T05042
Symbol
rad54b
Name
(RefSeq) DNA repair and recombination protein RAD54B
KO
K10877
DNA repair and recombination protein RAD54B [EC:5.6.2.-]
Organism
amex
Astyanax mexicanus (Mexican tetra)
Pathway
amex03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
amex00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
103046210 (rad54b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
amex03400
]
103046210 (rad54b)
DNA repair and recombination proteins [BR:
amex03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Rad54 family proteins
103046210 (rad54b)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
DEAD
HDA2-3
SWI2_SNF2
MgsA_C
Motif
Other DBs
NCBI-GeneID:
103046210
NCBI-ProteinID:
XP_007236568
Ensembl:
ENSAMXG00000039985
UniProt:
A0A8B9H0Q5
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All DBs
Position
1:109707126..109732494
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AA seq
923 aa
AA seq
DB search
MRRSAAPSQLQGNAVKRPRFIPPAPSQTGVLGNGINKHHQSQRVESHVPAPEVQISLSER
TVDVPAVPKVSGVCKALAKVLSAVTPTESKENAPELQRVPLESEQHLESPKPNRQDQLKK
HTDTTSPAAQYYSVVWCKASSRKHKRWEGDAVLVARGRSVVLKDMEGRDIGRGSGYKASE
LESLCEGQTLMVGGKQIEVMGVISNEDYAKGRCFQDAAVDVPLEAVTRAPVSRPLAKPFS
RPALKGGATKLGPEPEGPVPKPRHDPNAPGALVMPRPSANHQWLCNKTGLPVVDVVVDPH
LTNHLRPHQREGVVFLYECLMGMRLAGRCGAILADEMGLGKTLQCVCVLWTLLKQGPYGG
QPVLKRGLVVCPGSLVKNWGAEFNKWLGRERIRVFTVDQDNRVQDFVSSPLCPVMVISYE
MLLRSIEVLKKLDFSLVICDEGHRLKNSNIKTAGALTALACERRVILTGTPVQNDLQEFY
SIIEFVNPGILGTSAAYRKIYEEPIIRSRQPTCTEEERFMGEERAAELARLTSVFTLRRT
QEIINHFLPERLEWTVFCRPTELQVQLYDALLSTRSVRACISGYNTLNHSPHLACINALK
KLCNHPGLLYNTVKESTDELYESLSVKLFPEAYSTGNFCTADSGKLLVLTDLLKAIQHVN
RTDKVVLVSNYTQTLDLLQDLCTHLGYTWCRLDGQTPVAQRQRIVESFNSPYSSHFLFLL
SSKAGGVGLNLVGASHLVLYDIDWNPANDIQAMARVWRDGQKKTVHIYRFLTTGTIEEKM
YQRQVSKQGLSGTVVDLKKKAEHISFSAEELRDLFTFEANTSCLTHDLLDCQCLGDGSTP
GESEEVTVAEGRACQLGHRANSSSPCVPQRVTMSELMHWRHFSGAIQSYGDVYLDHAHQH
VTYAFQSSTSKSQTSAEQNLPKT
NT seq
2772 nt
NT seq
+upstream
nt +downstream
nt
atgcgccgctctgcagcccccagtcagcttcagggcaatgctgtgaagaggccgaggttt
atacctcctgccccctcacagactggagtactgggcaatggaattaacaagcatcaccag
tctcagagagtggagagccatgttcctgcacctgaggtccagataagcttgtctgagagg
actgttgatgttccagctgtgcccaaagtctctggggtgtgtaaagccttagccaaggtt
ctaagtgcagtcaccccgaccgagagtaaagaaaatgccccggaattacagagggtcccc
ctggaatcagaacaacacctggagtctcccaaaccaaaccgacaggatcagcttaaaaag
cacacagacacaacctctccagctgcacagtactacagtgtggtgtggtgcaaagcatcg
tcaagaaagcataagcgatgggaaggcgatgctgtacttgtggccagggggcggagtgtc
gttctcaaagacatggaaggacgagatattggacgagggtcaggctataaggcgtctgag
ctggagagcctgtgtgagggccagactctgatggtgggagggaagcagatcgaggtcatg
ggggtcatatcgaatgaagactatgccaaagggcgttgttttcaggacgctgccgtggat
gttcctttagaagctgtcaccagggcacctgtgagccgtcctctggcaaaacctttttcc
agaccagccctgaagggaggagccactaaattaggtcctgaacctgagggacctgtcccc
aagccccgacatgacccgaacgccccaggagctcttgtgatgccccgaccctcagccaat
caccagtggctttgtaataaaaccggactccccgtggtggatgtggttgtggacccccat
ctgacgaatcatctgcggccacatcaaagagagggtgtggtctttctgtacgaatgtctc
atggggatgaggttggctggacgttgcggagctattttagcagatgagatgggcctgggg
aagacgctgcagtgcgtgtgtgttctgtggactctgctgaagcagggcccttacggtgga
caacctgtgttaaagagaggtctggtggtatgtcccgggagcctggtgaaaaactggggt
gcagagtttaacaagtggctcggcagagagaggatcagagtttttactgtggaccaggat
aatcgtgtgcaggactttgtgtcctctcccctgtgtccggtaatggtgattagttatgag
atgctgctacggtcaatagaggtcctgaagaaactggatttcagcttggtcatctgtgat
gagggtcatcggctgaaaaacagcaacatcaaaactgccggtgctcttactgctctggca
tgtgaacgtcgagtgattcttacaggcactcctgtccagaatgatcttcaagagttctac
tccattatagagtttgtgaatccaggcattctgggaacctctgcagcatacagaaagatt
tatgaagaaccaatcattcgatctcgacagcccacatgcactgaggaagagaggtttatg
ggtgaggagcgagcagcagaacttgcgagactgaccagcgtgttcactctacgccggacg
caggagatcattaatcacttcttacctgagaggctggaatggacagtcttctgcaggccc
acagagcttcaagtgcagctctacgatgcactgctctccacacgatccgtcagggcctgt
atctctggatacaacacgctcaatcacagtccgcaccttgcctgcatcaatgctcttaag
aaactgtgcaaccacccaggactcctctacaacactgtaaaggagagcactgatgagttg
tatgagagcctgtcagtaaagctgttccccgaggcctactccactggcaacttttgcaca
gcggactctggaaaactactggtgctcacagaccttctcaaggctatacagcatgtcaac
cgcacagacaaggttgttttagtgtccaactacacgcagactctcgatctactacaagac
ctgtgcactcacctcggctacacctggtgccggcttgatgggcagacacctgttgctcag
cgacagcgaattgtggaatccttcaacagcccatactcctcacacttcctgttcctgctc
agctctaaggctggaggggtggggcttaacctggttggggcctcccatcttgttctgtat
gatattgactggaatccggctaatgacatccaggccatggccagagtgtggcgagatgga
cagaagaaaacggttcatatctacagatttttaaccacaggtaccatagaagaaaagatg
taccagaggcaggtgagtaagcagggtctgtctgggacagtagtagacctgaagaaaaag
gctgagcacatcagcttctctgctgaggagctgcgtgaccttttcacctttgaggctaac
acctcctgcctcacccatgacctgctggactgccagtgcttgggggatgggagcacacca
ggtgagtctgaagaggttactgtggctgaaggaagagcatgtcagttgggtcatcgtgcc
aacagttccagtccctgtgttccacaacgggtcaccatgtctgagctcatgcactggagg
catttctctggagccatccagtcatatggtgatgtttacctagaccacgcccaccagcat
gttacatatgcctttcaaagctccacttctaaaagccaaacttcagctgaacagaatctc
ccaaaaacataa
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