Astyanax mexicanus (Mexican tetra): 103046266
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Entry
103046266 CDS
T05042
Symbol
chd5
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 5 isoform X1
KO
K14435
chromodomain-helicase-DNA-binding protein 5 [EC:5.6.2.-]
Organism
amex
Astyanax mexicanus (Mexican tetra)
Brite
KEGG Orthology (KO) [BR:
amex00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
amex03036
]
103046266 (chd5)
Chromosome and associated proteins [BR:
amex03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
103046266 (chd5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
CHDCT2
CHDII_SANT-like
Helicase_C
CHDNT
DUF1087
PHD
Chromo
PHD-1st_NSD
ResIII
HDA2-3
PHDvar_NSD
HTH_Hrp3
PHD_2
DEAD
AAA_22
Motif
Other DBs
NCBI-GeneID:
103046266
NCBI-ProteinID:
XP_015457462
LinkDB
All DBs
Position
24:8380500..8469231
Genome browser
AA seq
1999 aa
AA seq
DB search
MPGSLSNEEEGQDDLDFEDDIADEDEEDERDNVPLSPLERFFSDNDSVKQKKKKPSKLKE
GKMPKVKKKKKEIPSVGEREDMSERDDHGHRSGSESSSYGTLKKKKKKPKEKKEKKAKWK
KKDDDDEDDDDDDGNMKEPKSSSQLMEEWGLEDVQYAFSEDDYKTITNYKAFSQFLRPLI
AKKNPKIPMSKMMTVLGAKWREFSANNPFKGSSATAVAAAVAAAVETVNVAPPISLSSIQ
QLSPTGPIKKAKTKEGKGPGAKKKSKPVKDTKKKVKPKKPKSKAGQSGKRKKASSSEEDF
LDDFSDFDDVSIHSASVRSDASGAPKKKPRRGRKKRKREDGDGYETDHQDYCEVCQQGGE
IILCDTCPRAYHLVCLDPELEKAPEGKWSCPHCEKEGIQWEAKDDDEEEEEAGGEEEDDH
MEFCRVCKDGGELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCMCPPLKGKVQRILHW
MWGDPPLPPEAPPTQDGEKTDILAKPPLKGRPERLLFVKWAGLSYWHCSWVNELQLELYH
TVMYRNYQRKNDMDEPPPYDYGSGEEELNNEKRKSKDPEYAAMEERFYRYGIKPEWMIIH
RILNHSFDKDGDVHYLIKWRDLPYDQCTWEVDDFDVPEYEPFKQAYWDHREQMLGEDLRP
LVVRKGKRPKEEVKRKEAPPETPVVDPTIKFDQQPWYINATGGTLHPYQLEGLNWLRFSW
AQGTDTILADEMGLGKTVQTIVFLYSLYKEGHSKGPFLVSAPLSTIINWEREFEMWAPDF
YVVTYTGDKDSRAVIRENEFTFEDSAVKSGRKVFRMKKDTPVKFHVLLTSYELITIDQAI
LGSIGWACLVVDEAHRLKNNQSKFFRILNGYKIYYKLLLTGTPLQNNLEELFHLLNFLTP
ERFNNLDGFLEEFADISKEDQIKKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSPM
QKKYYKFILTRNFEALNSKGGGNQVSLLNIMMDLKKCCNHPYLFPVAAVEAPVLPNGSYD
GNLLVKSSGKLTLLQKMLKKLKDEGHRVLIFSQMTKMLDLLEDFLEFEGYKYERIDGGIT
GGLRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAH
RIGQNKKVMIYRFVTRASVEERITQVAKRKMMLTHLVVRPGLGSKTGSMSKQELDDILKF
GTEELFKDDVEAIGDNKDGEEGNVIHYDDNAISKLLDRSQDATEDTEIQNMNEYLSSFKV
AQYVVQEEDREEEVQREIIKQEENVDPDYWEKLLRHHYEQQQEDLARNLGKGKRIRKQVN
YNDTSQEDQEWQDDLSDNQSEYSVGSEDEDEDFEERPEGGRRQSRRQLKSDRDKPLPPLL
ARVGGNIEVLGFNARQRKAFLNAIMRWGMPPQDAFNSHWLVRDLKGKSEKEFRAYVSLFM
RHLCEPGADGAETFADGVPREGLSRQHVLTRIGVMSLVRKKVQEFEHVNGKYSSPELIPA
GLELKKLTESLSSDPNTPVPASPAPTQPSTPVPSDKTDGGPGLQEDKEAADQESTKPTES
ETSKESEPLPFPEKATENEDVKRSSSEEKSNEESEKKENTASQAEPSANQTQPTSKQTEP
STNQNQPASTVEQSKDAESAAEKSESDSTLVKTEDKEPRPVSTAAPHEPKSEDAAETQLN
GDKEARDEADESHKDDKNGVKTRFMFNIADGGFTELHTLWQNEERIAVSSGKMYEIWHRR
HDYWLLAGIVTHGYARWQDIQNDPRYAILNEPFKTEMNKGNYLEMKNKFLARRFKLLEQA
LVIEEQLRRAAYLNMTQDAGHPAMALNTRFAEVECLAESHQHLSKESLAGNKPANAVLHK
VLNQLEELLSDMKADVTRLPSMLSRIPPVSARLQMSERSILSRLTSRGNEPPPQQPFPQG
SFGCSQMYSNSFGGGFRGPGGAPMVNYSQMPLGPYVSVSSNGPPLPSSHLDKKSSDALRD
MSPPELKSGKPSDVICIED
NT seq
6000 nt
NT seq
+upstream
nt +downstream
nt
atgcccggatcgctgagcaatgaagaagaggggcaagacgatctggattttgaagacgac
atagcagatgaggatgaagaagatgagcgggacaatgtgccgctgtcacccctcgaacgc
ttcttttctgacaacgattcggtcaaacagaagaagaagaagcccagcaagctgaaagag
ggcaagatgccgaaagtaaagaagaagaaaaaagagattccgagtgttggtgagcgtgag
gacatgtcagaaagggatgaccatggacatcggtcaggaagtgagagtagcagttacggc
acactgaagaaaaagaagaagaagcccaaagagaaaaaagagaagaaagccaaatggaaa
aagaaagatgatgatgatgaagatgacgatgatgatgatggaaatatgaaggagcccaag
tcttcgagccagctgatggaagagtggggtctggaggatgtgcagtatgctttctctgaa
gacgattacaaaaccattactaactacaaggcttttagccagtttctcaggcccctcatt
gccaagaagaaccctaaaattcccatgtccaagatgatgacagtgttaggagccaagtgg
cgggagttcagcgccaataacccattcaaaggctcttctgccacggccgtggctgctgct
gtggctgcagccgtggaaacagtcaatgtggccccgcccatctctcttagcagtatccag
caactttctccaacggggccaatcaaaaaagccaaaaccaaagaggggaaggggcccggt
gctaagaagaaaagtaaaccagtaaaagacacgaaaaagaaagtgaaacccaagaagccc
aaatcaaaggcaggccagagcggcaaaaggaaaaaagcctcttcgagcgaggaggatttc
ttagacgacttctcagactttgatgatgtcagcatacacagtgcctctgttcgctccgac
gcctcgggtgcacccaagaaaaaaccccgccgaggacgcaaaaagcggaaaagagaggat
ggagacggatacgagacggatcatcaggattactgtgaggtgtgtcagcagggaggagag
attattctgtgtgacacctgccccagagcctatcacctggtgtgtctcgacccggagctg
gagaaagctcccgaggggaagtggagctgcccccactgcgagaaggagggcattcagtgg
gaggccaaagacgatgatgaagaggaggaggaggctggtggtgaagaagaggacgaccac
atggagttctgtcgagtgtgtaaggatggaggggagctgctgtgctgtgatacgtgtccg
tcctcctatcacatccactgcctcaacccacccctgcctgaaatacccaacggagaatgg
ctatgcccacgatgtatgtgccccccacttaaagggaaagttcagaggattctgcactgg
atgtggggggatcccccactaccccctgaagctcctccaacccaggatggagagaaaaca
gatattctagcaaaacctccactcaagggccggccggagagactgctgtttgttaagtgg
gctggactgtcgtactggcactgttcatgggtcaacgagttacagctggagctgtaccac
acggtcatgtaccggaactaccagcggaagaatgacatggatgaacctccgccatacgat
tacggctctggagaggaggagctcaataatgaaaaaaggaagagtaaagacccagagtat
gctgccatggaggagcggttctaccgctacggcatcaaacctgagtggatgatcatccat
cggatactcaaccacagttttgataaggatggagatgttcattacttgatcaaatggagg
gacctgccatatgaccagtgcacttgggaggtagacgactttgatgtcccagaatacgag
ccctttaaacaggcctattgggaccacagagagcagatgcttggcgaggaccttcgcccc
cttgtggtgagaaaaggaaagagaccaaaagaggaagtgaagaggaaagaggctccacct
gagactccagttgttgatcctacaatcaagttcgatcagcagccttggtacatcaatgcc
acgggaggaacgctgcacccgtaccagctggagggcctgaactggctgcgtttctcctgg
gctcagggcacagacaccatcctggctgatgagatgggactgggcaagaccgtccagact
atagtatttctgtactcactctacaaagagggtcattccaaagggcctttcctggtcagc
gctccgctgtccactattattaactgggagagagagtttgagatgtgggcgccggatttc
tacgtggtaacatacacaggggacaaggatagccgggctgtcattcgggagaatgaattc
acttttgaggacagtgccgtcaaatctggacgtaaagttttccggatgaagaaagacact
cctgtgaagtttcatgtgttgctgacctcgtacgagttgatcaccattgaccaggccatt
ctgggatctattggctgggcctgtcttgtagtggacgaagctcacaggctaaagaacaac
cagtctaagtttttcagaattctgaatggctataagatctattacaagctactcctcact
ggaactccactgcagaacaatctagaagagctattccacctacttaacttcctcacccca
gagcgcttcaacaatctggatggctttctggaggaatttgcggacatctctaaagaagac
cagataaagaagctgcatgacctgctgggaccgcacatgctcaggaggctgaaggcagat
gtttttaaaaacatgccggcaaagacagagctcattgtccgagtagagctcagccccatg
cagaagaagtactataaattcatcctgacacggaattttgaggctctgaactccaaggga
gggggaaaccaggtttctttgctcaacatcatgatggacctaaagaaatgctgcaatcac
ccttacctgtttcctgtggcagctgtggaggcgccggtgttacccaatggctcttacgac
ggcaacctactggtgaagtcctcaggcaaactcactctacttcagaagatgctgaagaag
ctcaaagacgaaggacacagagtccttattttctcccagatgactaagatgctggacctg
ttagaggactttctggagtttgaaggctataaatacgagcgtattgacgggggcatcaca
ggaggactgcggcaggaggccattgatcgcttcaatgctccgggggcgcagcagttctgt
ttcctgctgtccacacgggccgggggactggggatcaatctggcaaccgctgatacagtt
atcatctatgactctgactggaaccctcacaatgatatccaggcttttagccgagcacat
cgtattgggcagaataagaaagtgatgatctatcgtttcgtaacacgagcatctgttgag
gaacgaatcactcaggtggccaaacgcaagatgatgctgacccatctggtggtgcggcca
gggttagggtctaaaacgggatccatgtccaaacaggaactagatgacatccttaagttt
ggcacagaggagctcttcaaagacgatgtggaagctatcggggacaataaggatggagag
gaaggcaatgtgatccattacgatgacaatgccatctccaaactgctggaccgcagccag
gacgccacggaggacaccgagattcagaacatgaacgagtacctcagctccttcaaggtg
gcacagtacgtggttcaggaggaagacagagaggaggaggttcaaagggagattattaag
caggaggagaacgtggatccagattactgggagaagctcctacggcatcattatgaacag
cagcaggaggacctggcacgcaatctgggcaagggcaaacgcatccgcaaacaggtcaac
tacaacgacacatctcaggaggaccaagaatggcaggatgatctttcagacaatcagtcc
gagtactctgtgggatccgaggatgaggatgaagatttcgaggagaggcctgaaggaggg
cgcagacagtctcgcagacagctgaagagtgaccgggacaaaccactgcccccactgctg
gctagggtagggggcaacatagaggtgcttggttttaatgcacgtcagaggaaggcattc
ctgaatgctatcatgcgatgggggatgccaccacaggatgcttttaactcacactggctg
gtcagagacctgaagggcaagagtgaaaaggagttcagggcatacgtctcattgtttatg
aggcacctgtgtgagcctggagctgatggggcagagacatttgcggatggtgtgccgaga
gaaggtctgtcccgacagcatgtactcaccaggatcggagtcatgtctctggttcggaaa
aaggtccaggagtttgagcatgtgaatggtaaatatagctctcctgagctaattcctgca
ggactggagctgaagaaattgacagagagtctttcatctgacccaaacactcctgttcca
gccagccctgctccaacacaacccagcacacccgtaccctcagataaaactgatggtggt
cctggtcttcaagaagacaaagaggctgctgaccaggagagcaccaagcctacagagtct
gagacatctaaagagtcagagcctttgcccttccccgagaaggctacagagaacgaagac
gtgaagagaagcagctctgaggagaagagtaatgaagagagtgaaaagaaagaaaacaca
gcatcccaagcagagccatcggccaatcaaacacagccaacatccaagcagacagagccg
tccaccaatcagaatcagcctgcatctacagtagagcaaagtaaagatgcagagagcgca
gctgagaaatcagagagtgactctacgctggtaaaaactgaggataaagaaccaagacca
gtttccacagctgctccccatgagccgaaatccgaggacgctgccgagacgcagctgaat
ggagataaagaagcgagggatgaggcagacgagagccacaaagacgacaagaacggcgtc
aagacacgcttcatgttcaacatcgcagacggaggcttcacagagctgcacactctgtgg
cagaacgaagagcgcatagccgtgtcatctggcaagatgtacgaaatctggcaccgccgc
cacgactactggctgctggctggcattgtaacccatggctatgctcgctggcaggacatc
cagaacgatcctcgctatgccatcctcaacgagcccttcaagactgagatgaacaaaggc
aattacctggagatgaagaacaaatttctggcacgacgttttaaactgttggagcaagcc
ctggtgatagaagagcagttacgcagggcagcctatctgaacatgacccaggacgccggc
caccctgccatggccctgaacacacgctttgctgaggttgagtgcctggccgagtcccac
cagcatctctccaaagagtcactggctggcaacaagccagctaatgctgttctgcacaaa
gttttgaaccagctggaggaactcctgagtgatatgaaggctgatgtaacgcggctgccc
tccatgctctcccgtatccctcccgtatccgcccggctacagatgtccgagaggagcatt
ctcagccgactcacgagccgcggcaatgagccgcctccacagcagccttttccacagggc
tcgtttggctgttctcagatgtatagtaacagttttggaggaggattcagggggcctggt
ggggcacccatggtcaattatagccagatgcccctaggaccatacgtcagtgtgtcctca
aacggccccccacttcccagcagccacctagacaagaagtccagcgacgctctgagggac
atgtccccgcctgagctgaaatccggcaagccctctgatgtcatctgcattgaagactag
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integrated database retrieval system
