Astyanax mexicanus (Mexican tetra): 103046331
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Entry
103046331 CDS
T05042
Symbol
trpc1
Name
(RefSeq) short transient receptor potential channel 1
KO
K04964
transient receptor potential cation channel subfamily C member 1
Organism
amex
Astyanax mexicanus (Mexican tetra)
Brite
KEGG Orthology (KO) [BR:
amex00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
amex04040
]
103046331 (trpc1)
Ion channels [BR:
amex04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
103046331 (trpc1)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRP_2
Ion_trans
Ank_2
Ank_4
MTR4-like_stalk
LHD_TRPY1
TALPID3
Motif
Other DBs
NCBI-GeneID:
103046331
NCBI-ProteinID:
XP_022518425
Ensembl:
ENSAMXG00000015165
UniProt:
A0A3B1JUC7
LinkDB
All DBs
Position
6:50851770..50902751
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AA seq
798 aa
AA seq
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MHISVLPCSLSVVMAAGYQAPGASAPDTYLALKDVREVKEDTTLDEKLFLLACEKGDYYM
VKKLLEEKRHGELNLNCVDVLGRDAVTIAIENENLDILQLLLEHGCQSTDALLVAIDSEV
VGAVDILLNHRPRRSSKPSIAKLMQRIQNPEYSTTMDVAPVILAAHRNNYEILTMLLKQD
ISLPRPHAVGCECTLCNAKNKKDSLRHSRFRLDIYRCLASPSLIMLTEEDPILRAFELSA
DLKELSLVEVEFRNDYEELAKQCKMFAKDLLAQARNSRELEVILNHTSSEDHVDKRGLLE
ERMNLSRLKLAIKYNQKEFVAQSNCQQFLNTVWFGEMASYRRKHTGLKMGTVLSVALLWP
LLSVCYLLGPRSRVGQIIHTPFVKFIIHSASYFTFLLLLNLYSLVYNEDKKNTMGPALEM
IDYLLILWIIGMVWSDVKRLWYEGLEDFLEESRNQLSFVMNSLYLATFALKVVAHSKFKN
VDETERKNWDASNPILVAEGLFAFANVLSYLRLFFMYTTSSILGPLQISMGQMLQEFGKF
LGLFLLVLFSFTIGLTQLYGKDKKDTTTGKNGTEECEGINCPLQSNDTFHSFMGTCYALF
WYIFSLAHVALYVTRITYTDELRSFVGAMIVGTYNIVVVIVLTKLLVAMLHKSFRQIANH
EDKEWKFARAKLWLSYFDDKCTLPPPFNILPSPKTLCYLVTSLSKWICSHTSTGKVKRQN
SLREWRNLKQKHDENYQKIMCCLVHRYLTSTRQKMQSTDQATVENLNDLRQDLSKFRNEM
RDLLGFRTSKYAMFYPRS
NT seq
2397 nt
NT seq
+upstream
nt +downstream
nt
atgcacatcagcgtcctgccctgctccctctccgtggtcatggctgccggataccaggcc
cctggcgcctccgctccggacacctatctggcgctgaaggacgtgagggaggtgaaggag
gacaccacgctcgacgagaagctctttctgctggcctgcgagaagggcgattactacatg
gtgaagaagctcctggaggaaaagcggcacggtgagctgaacctcaactgtgtggacgtt
ctgggccgagacgcggtcactatcgccatcgagaatgaaaacctggacatactgcagctt
ctgctggagcacggttgccagtccacagatgcacttttggtggcgattgactcagaggtg
gtgggagctgttgacattcttctcaaccatcggcccagacgatcctccaaaccctccatt
gcgaaactgatgcagcgcatccaaaatccagaatattccacaaccatggacgtggcccct
gtcattctggccgcccacaggaacaactatgagatcctgaccatgctgctgaagcaggac
atctccctgccccggccgcacgctgtgggctgcgagtgcacgctctgcaacgccaagaac
aagaaggacagcctgcgtcactccaggttcaggctggatatctaccgctgcctggccagc
ccatcactcatcatgctgacagaggaggaccccatcctccgagcgtttgagctcagcgcc
gacctcaaggagctcagtctggtggaggtggaattcaggaacgattatgaagagctggcc
aagcagtgtaagatgttcgccaaggacctgctggcccaggcccggaactctcgcgagctg
gaggtcatcctgaaccacacgtccagtgaagatcacgtggacaagagaggactgctggag
gagcgcatgaacctcagccgcctcaaactggccatcaaatataatcagaaggagtttgtg
gcgcagtctaactgccagcagttcctgaacacggtgtggtttggagagatggcgagttac
aggcgtaaacacacagggctgaagatggggacggttctgagcgtggctctgctgtggcct
ctgctgtccgtctgctacttgctgggtccacggtctcgcgtgggtcagatcatccacacg
cccttcgtcaagttcatcatccacagcgcctcctacttcaccttcctgctcctgctcaac
ctctactcgctggtttacaacgaggacaagaagaacaccatgggtccagcactggagatg
atcgactacctgctcatcctctggatcatagggatggtgtggtcagatgtgaaacgtcta
tggtatgagggcttggaggactttctggaagagtccaggaaccagctaagttttgtaatg
aattccctctacctggcaaccttcgctctcaaagtggtggcccacagcaagtttaagaat
gtggatgaaactgagcggaaaaactgggacgcgtctaaccccatcctggtggcggagggg
cttttcgccttcgccaatgtgctgagttacctccgcctcttcttcatgtacacaaccagc
tccatcctcggccctttacagatctccatgggtcagatgctgcaggagtttgggaagttc
ctcggcctgttcctgctggtgctgttctccttcaccatcggtctgacacaactttacggg
aaggacaagaaggacacgaccacgggaaagaacggcacagaggagtgcgagggcatcaac
tgcccgctgcagagcaacgacacctttcactcgttcatggggacgtgttacgccctgttc
tggtacatcttctccttggcccacgtggctctttacgtgaccaggataacctacactgat
gagctgcgttcgtttgtgggtgccatgatcgtcggcacctacaacatcgtggtggtgatc
gttctcaccaagcttctggtggccatgctgcataagagcttcagacagatagctaatcac
gaggataaggagtggaagtttgcccgggcgaagctctggctcagctattttgatgataag
tgcaccctgcccccacccttcaacatcctgccctccccgaaaaccctctgctacctggtg
accagcctgagcaagtggatctgctcacacacctccacgggcaaggtcaagagacagaac
agcctcagggagtggaggaatctgaagcagaagcatgatgagaactatcagaagatcatg
tgctgcctggtgcatcgctacctgacctccacgcggcagaagatgcagagcacagaccag
gccacggtggagaacctcaacgacctgcggcaggacctctccaagttccgcaacgagatg
agggacctgctcggcttccgcacctccaaatacgccatgttctaccccagaagctaa
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