Astyanax mexicanus (Mexican tetra): 103046352
Help
Entry
103046352 CDS
T05042
Symbol
chd9
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 9 isoform X1
KO
K14438
chromodomain-helicase-DNA-binding protein 9 [EC:5.6.2.-]
Organism
amex
Astyanax mexicanus (Mexican tetra)
Brite
KEGG Orthology (KO) [BR:
amex00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
amex03036
]
103046352 (chd9)
Chromosome and associated proteins [BR:
amex03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
103046352 (chd9)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
HTH_CHD6-9
BRK
Helicase_C
Chromo
ResIII
DEAD
HTH_Hrp3
HDA2-3
Motif
Other DBs
NCBI-GeneID:
103046352
NCBI-ProteinID:
XP_022522773
Ensembl:
ENSAMXG00000005652
LinkDB
All DBs
Position
23:10737502..10847179
Genome browser
AA seq
2980 aa
AA seq
DB search
MDFFGDPNLFEGLAQDCFDSGSVSLADELDLGSGFDPPLVNPVGAEKHPGMVANSVPSAN
PPGLHYSQSMAQFEGMKVQTSMPQSFSNSGGDHSVGGPFLNQQSHFQEPSMNQVSQTNGL
YPSNSPIWGEQRVHAYHQHLQQHQQQQLKQQLHQQQIQQQLHHHQGQQQHPQHPHQYNHQ
HSHLQQSQQIRQHQLPAQHQMPHQQINAQSMHQHTNFYYHGPSNVPSHQGHHSSVNPEGS
PFHPGADAGPRSRPKPYAEVPIIPTTSEQHGRFQLAQELQGFSRVSEAQDNNLGFHVQSS
PETYALSSCSANLAPSFPPSQYSFPGHPPAATNASHPLSVAPVTLTTTTAAIASGSDHGG
QTSNCPFLSDPLMEQQRGQIQIPRRQLQECPFSSLQTSKPAQQDTYGSSQMFSEALDSFP
ATNGYLSQQDENRATNPSGSSCSGFQGLDETLMDHQSEDIDRIAEGHDLLGDELLPQLEA
FVHEETSSRSWTSTKQDKTAEEEGVKRDTIKKEPGDNLAFERSLPSYYESHEPPKNTNGS
SSQVRLLSPPMKSSSSSSSSSSSYSSASEKRVQKQQRQQQQMEASALEDKQQKANRIISE
AIAKARERGEKNIPRVMSPESFPSSSQHRGHRSSASKSKSKDKSSKKARIITSSKSKQKT
KIGKIVIKFGKKKKRKAESSDDLSDDERPRRRSSRDDDSKRRSNRQVKRKKYAEQDSRVS
DDEMKVIVKAKKINSEPAVQLFVENPSEEDAAVVDKIMASRIVKNEVSPGVMVEVEEFYV
KYKNYSYLHCEWATEQHLEKDKRIQQKIKRFKIKQAQRAHFFADMDEDPFNPDYVEVDRV
LEVSYCEDKDTGEPVVYYLVKWCSLPYEDSTWELKEDVDQTKIEEFEKLQAARVDSRRVE
RPPASHWKKLEQSREYRNGNSLRDYQLEGVNWLLFNWYNRRNCILADEMGLGKTIQSITF
LKEIHRKGIKGPFLIIAPLSTIANWEREFRTWTHLNVIVYHGSVLSRQMLQQYEMYFRDA
QGRVVKGAYRFQAVITTFEMILGGCPELNAIEWRCVIIDEAHRLKNKNCKLLEGFKLMNL
EHKVLLTGTPLQNTVEELFSLLHFLEPSRFPSENTFMQEFGDLKTEEQVQKLQAILKPMM
LRRLKEDVEKKLAPKEETIIEVELTNIQKKYYRAILEKNFSFLAKGVGQANVPNLVNTMM
ELRKCCNHPYLIKGAEEKILEDFREVCSPSAPDFHLQAMVQSAGKLVLIDKLLPKMKAGG
HKVLIFSQMVRCLDILEDYLIQRRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCT
RAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQNKAVKVYRLITRNSYEREMFD
RASLKLGLDKAVLQSMSGRDNSLGGGGQIQQQLSKKEIEDLLRRGAYGAIMDEEDEGAKF
CEEDIDQILQRRTKTITIESEGRGSTFAKASFVASGNRTDISLDDPNFWDKWAKKAEIDL
DSVNGRNSLVIDTPRVRKQTRPFSATKDELAELSEGESSGDDKPKLRRTHDRLNSYGRTE
CFRVEKNLLVYGWGRWRDILQHGRFKKQLTEKDVEWICRALLAYCLVHYRGDDKIKSFMW
DLIAPSEDGRTKELQNHLGLSTPVPRGRKGKKMKTQSSTFDIQKAEWIRKHNPEHMLSDD
GYKKHLKHHCNKVLLRVRMLYYLKQEVIGAQNQRVLDGAEASEIDISIPDPDHSELPALW
WDAVADKCLLIGIFKHGYEKYNTIRADPTLCFLDRVGRPDEKAIAAEQRGNDFMDGDVDD
PEYKPAPAMIKDDMEDDASSPGDLVIADTGGEGGSVLDGGGGTLGAGMGAYWPSQSALTA
RLRRLITASQRFTKSRQILQIHKTQQIMAPSLCPLPPTITETLNPKMVAKIERQQRWTRR
EEADFYRVVSTFGVVFDPDLGRFDWTKFRAMARLHKKTDESLQKYLCSFNAMCRRVCRLP
AREGDIVDPSLSIQPITEERASRTLYRIELLRQVREQVLRHPQLYERLSLCQTGPDLPVW
WEPGTHDRDLLIGAAKHGVSRTDYHILRDPELCFMTAQRNYSQNKGVPAPAQPQNQALLL
GQTRTPTPLLQNQQIQAPGAPASPLMANSGHREEVVMPKEEPLLEGDEANRPQETVMKMW
SPSVRPPTPTGEVLVKEEIAGNAGESERMVAARTKPLTPNSAARKQKKLSKRSRKEARRR
SGSESDSDGSSSSSSSSSSSRSSGSSSSSSHSGSSSSSSSSSCSSGSSSSSSSSSSSGES
DSEEAPKNPSAVPGVKGFDEDSIASHSTTHEDLQDSHVTNGITNPSHPFQGGYMLAASYW
PKDRVMINRLDSICQAVLKGKWPGTRRVYDGTAVASFYTTKLLDNAANLAEDPAASPQGS
KVKKHDADREKEFSVKINDQEGSLKLTFQKQGMSLKRPLDGEEGPLAQQQYLARLQELQS
ASDSGLIDYTKSLNSYPQGMAGVPGVSGMAGMAGVAGQMHLNGVVDGQPVVKRRRGRRKN
VEGMDLLFMNKNRPPVMPDQVPPGWSGSVPPGMAPGQSMPQVVGPIDTESRVPVINLKDG
TRLAGEDAPKRKDLDQWLKEHPGFVADVGSFIPGVNKMQFQDGRPKQKRHRCRNPNKIDV
NSLTGEERVQIINRRNARKIGGAFAPPLKDLCRFLQENPEYGVPPEWADVVKQSGYLPES
MFDRILTGPIVPEEVSRRGRRPKNALTKAAATASAGANTAALGLNPLLANGLLGGLDLTS
LQALQSIQSLQLTAGLIGLQPDAANMAAMLPVMLSGMAGLPNLLGMSSLLGKQDAAGAMA
TGSEETGNKSSGESTAQTSSADVKVERTESQSSTPSSSAATNSTQLSASASGHPLALNPL
LLSSMLYPGMLLNPGLNLPVANQPQATNTQPTPPPQPAPSEATQQQPNQSEEKGRDEGEE
PEEQRDNSGPEGSGKAEESSSSESESSSSSSEDSDSSDED
NT seq
8943 nt
NT seq
+upstream
nt +downstream
nt
atggacttttttggtgacccaaatctttttgagggcttggcccaggattgttttgactct
ggttcagtatctttggcggatgagttggatctaggctcgggatttgatccacctttagtg
aatccagtgggggctgaaaaacaccctgggatggtcgcaaattcagtgccctctgccaat
ccgcctggtctacactacagtcagtcgatggcacaatttgaaggaatgaaggtacagacc
tctatgccacagtccttctctaactctgggggtgatcacagtgtcggagggcctttcttg
aaccagcagtctcattttcaagagccatcaatgaatcaagtatctcagactaatggactg
tatcccagcaacagccctatatggggggaacagcgagtacatgcttaccaccagcatctg
cagcagcatcaacaacaacaacttaagcagcaattacatcagcagcaaatccagcaacag
cttcaccaccatcaaggtcaacaacaacatccacagcatccacatcagtacaatcaccaa
cattcacatctccaacaaagtcagcaaatccgacagcatcaactgccagcccagcaccag
atgccacaccaacaaattaacgctcagagtatgcaccagcacacaaacttttactaccat
ggcccatccaatgtcccatcccaccaaggccaccatagctcagtaaatccagagggcagt
ccctttcatccaggtgccgatgctggtcctcgctctcggcctaagccttatgctgaggta
ccaatcattcccacaacatctgagcaacatggtaggttccagctagctcaagagctgcaa
gggttctcaagggtttctgaagcacaggacaataacctggggttccatgtacagtcttcc
cctgaaacctatgccctgtcatcctgctcagccaaccttgctccatcctttcccccctct
caatactccttccctgggcatcctcctgctgcgacaaatgcatcccatccactctctgtt
gccccagtcacgttgaccaccaccactgcggcaattgcatctggttctgatcatggtggc
cagacttccaactgcccgttcttgtcagatcctctaatggagcagcagagaggccaaatt
cagatccctagaaggcagctgcaagagtgccctttcagttccctacagacgtccaagcca
gcacaacaggatacctatggttcttctcaaatgttctcagaagccttagactctttccct
gccacaaacggctacctctcacaacaggacgagaaccgtgccaccaacccgagtgggtca
agctgcagtgggtttcaaggccttgatgagaccttgatggatcatcagtctgaagatatt
gacaggattgcagagggacatgatcttttgggagatgagctgttgccccagctggaagct
tttgtacacgaggagacctccagcagatcctggaccagcaccaaacaagataagacagca
gaagaagaaggagtaaagagagatacaataaagaaggagccaggagataacctggcattt
gagcgatcactgccgtcatactatgagtcacacgagcctccaaagaacactaatggttcg
agcagtcaggtacggctgctcagtccgccgatgaagagcagctcctcctcgtcctcgtct
tcatcttcatactcttccgcgtcagagaaacgggtgcagaagcagcagaggcagcagcag
cagatggaggcgtccgctttggaggacaagcagcagaaggccaatcgaataatttctgag
gccatcgctaaagcccgggagcgaggagagaagaacatcccacgtgttatgagcccagaa
agtttccccagctcctcccagcatcgtggccacaggtcatcagcctccaaatccaaaagc
aaggacaagagttccaagaaggctcgaatcataacgtcctccaaatctaaacagaagacc
aagatcggaaaaattgtgataaagttcgggaagaagaagaagcgtaaggcggaatcctct
gatgacctgtctgatgatgagcgaccccggcgacgatcctccagagacgacgactcgaag
cggcggtcgaacagacaggtgaaaaggaagaagtacgcagagcaagactctcgagtatct
gatgatgagatgaaggtcatcgttaaagccaagaagatcaactctgaacctgcggtacag
ttgtttgtggagaatcccagtgaggaggacgcagctgtagtggataagatcatggcctcc
cgtatagtgaagaatgaggtgtccccaggcgtcatggttgaagtggaggagttttatgtc
aaatataaaaactactcttatctgcattgtgagtgggctacagagcagcatttggagaag
gacaagaggatccagcagaaaatcaaacgcttcaagatcaaacaggcccagagagcacac
ttctttgctgatatggacgaggatccattcaatcctgactatgttgaagtggatcgagtc
ctggaggtttcctactgtgaggacaaggacactggagagccggtggtgtattacctggtg
aagtggtgttcgttgccgtacgaggacagtacatgggagcttaaggaagatgtggatcag
actaagattgaggagtttgagaagctgcaggcagcgagagtagactccaggagagtggag
cgccccccagcaagtcactggaagaagctcgagcagtccagggagtatcgtaatggtaac
agtctcagggattaccagttagaaggggtcaactggttgctcttcaactggtacaacagg
cgtaactgtatcttggctgacgagatgggtttgggaaaaaccatccagtccattacgttt
ctgaaggagatccatcgcaaagggataaaggggcccttcctcatcatcgctcctctctcc
accatcgccaactgggagcgagagttccgcacatggacgcacctcaacgtcatcgtctac
catggcagcgtgctgagccggcagatgctgcagcagtacgagatgtacttcagggatgct
cagggtcgagtggtgaaaggggcctatcgctttcaggcagtaatcaccacgtttgagatg
attttgggaggctgtccagaactcaacgcaattgaatggcgctgtgtgatcatcgatgaa
gctcatcgtctgaaaaacaaaaactgcaagctgctggagggcttcaaactgatgaacctg
gagcataaggtgctgttaactggcactcccctgcaaaacactgtggaagaattgttcagc
ctgctgcatttcctagagccgtcacgcttcccctctgaaaacaccttcatgcaagagttt
ggagacttgaagactgaggagcaggtccaaaagcttcaggccattcttaagccaatgatg
ctccgtcggctgaaggaggacgttgagaagaaactggctcctaaagaagagaccatcatt
gaggtggagctcaccaacatccagaagaaatactaccgtgctatattggagaagaacttc
tccttcctggccaaaggagttggacaagccaacgtccccaacctggtcaacaccatgatg
gaattgaggaaatgttgcaatcacccctacctcatcaaaggggcagaagagaagatcctg
gaggacttccgggaagtgtgcagcccctcagccccagacttccacctgcaggccatggtg
cagtctgccggcaaactcgtcctcattgacaagctgctgcccaaaatgaaggccggtgga
cacaaagtcctcattttctcccagatggtgcgctgcctcgacatcctggaagactacctc
atccagagacgatacctctatgagcggatagacgggcgagtgcgcgggaaccttcggcag
gcagccatagatcgcttcagtaaaccagactccgaccggttcgtcttcctgctgtgcacg
agagctggtgggctgggtatcaatctgactgctgctgatacctgtatcatctttgactca
gactggaaccctcagaacgatctgcaggcccaggctcggtgtcacaggattggtcagaat
aaggcagtgaaggtgtatcggctgatcacgcgtaactcatatgaacgagagatgttcgac
agagccagcctcaaactaggactggacaaggctgtgctacagagtatgagtgggcgggac
aacagcctcggaggaggagggcagatccagcagcagctctctaagaaagagattgaagac
ctgttgaggcgcggagcatatggtgccatcatggatgaggaggacgagggtgcaaaattc
tgcgaggaagatatcgaccagatcctccaacgcagaaccaaaaccatcactattgagtcg
gagggacgggggtccacctttgccaaggccagttttgtagcttcagggaatcgcacagat
atctcacttgatgaccctaacttctgggacaaatgggccaagaaggcagaaattgacctg
gactcagtcaatggcagaaacagcctggtgattgacacgccaagggtgcggaagcagaca
cgcccgttcagcgccactaaagatgagctggctgagctgtcagagggtgaaagcagcgga
gacgacaaaccaaaactacggcgcacacacgatcgcctcaacagttatggacgaacggag
tgctttcgtgtggagaagaaccttttggtttatgggtggggccgctggagggacatcctg
cagcatggtcgttttaagaagcagctgactgagaaggatgtggaatggatttgcagagca
ctgctcgcgtactgcctcgtgcattacagaggagatgacaagatcaaaagcttcatgtgg
gacctgatcgccccgtctgaggacggcaggaccaaggagcttcagaatcatctggggctc
tccacgccagttcctcgagggaggaaggggaagaagatgaagacccagtcgagcacattt
gacatccagaaggcagagtggatcaggaaacacaacccagagcacatgctgtctgacgac
ggatacaaaaaacacctcaagcaccactgcaacaaggtgttgttgagagtgagaatgctg
tactatctgaaacaggaggtcattggtgcacagaatcagagagtgctggacggagctgaa
gctagtgagatagatatttctattcctgatccggatcattctgagctgcctgctttgtgg
tgggatgctgttgccgacaaatgtctgttgattggaatctttaagcatggttatgagaag
tacaacactattcgcgcagatcctactctgtgtttcctagaccgggtcggccggccagac
gagaaggctatcgctgctgaacagagagggaatgattttatggatggggatgttgatgat
cctgagtacaaacctgctccagctatgataaaagacgatatggaggatgatgcttcctct
ccaggtgatttggtcatagcagatacaggaggagaaggtggttctgtgttggatggcggg
ggcggtactctcggagccgggatgggagcgtactggccgtctcagtctgcgttaactgct
cgactgcggcgcctcatcactgcgtctcagcgcttcaccaagagcagacagatcttgcag
atccacaaaacccagcagatcatggctccttccctctgccctctgcctcccaccatcaca
gaaacgctcaaccccaaaatggtcgccaagattgagagacaacaaaggtggactaggaga
gaggaggcagacttctaccgtgtggtctctacatttggagtggtgtttgacccagacctg
ggccgctttgactggaccaaattcagagccatggcacgtctgcacaagaaaacagacgag
agtctccagaaatacctgtgttctttcaatgccatgtgcaggagagtctgtcgtctgcca
gcgagggagggcgatatagtggatccctctctctccatccagccaatcacagaagagcgt
gcgtcccgtacgttgtaccgcatagagttgctccgacaggtgcgggagcaggtgctgcgg
cacccccagctttacgagcgcctctcactgtgccagacaggaccagacctgcctgtgtgg
tgggagcctggaactcacgaccgagacctgttgattggggcggccaagcatggagtcagc
cggacagactaccacatactgcgtgacccagagctctgcttcatgacggctcagaggaac
tacagccaaaacaagggggttccagcaccagcccaaccccaaaaccaggcactgttgctg
gggcagacccgcactccaacccccttgctgcagaaccagcagattcaggctcctggagct
ccagcatcaccgctaatggctaattctggccacagagaggaggtggtcatgcctaaggag
gagccgcttctagagggagacgaggcaaacaggcctcaggaaacagtaatgaagatgtgg
agtccttctgttaggcctcctacacccactggggaagtactggtgaaagaagagatagca
gggaacgctggagaaagtgagagaatggtggcagccagaacaaaacccctcacgccaaac
tctgccgctcgtaagcagaagaagttgagtaagaggagccgcaaagaggctagaaggagg
tccggttcagagtctgactctgatggatcctcatcaagctcctcatcaagttcttcatca
agatcctcaggatcttcatcatcttcatcacactcaggatccagttcctcatcctcatct
tcttcttgctcttctgggtcgtcatcttcatcgtcatcgtcgtcatcttctggggagagc
gacagtgaagaagctccaaaaaatccatcagctgtgcctggcgtaaaaggctttgacgag
gacagcatagcatctcatagcactactcacgaggatctgcaggacagtcacgtgaccaac
ggcatcactaacccctcccaccccttccagggaggttacatgcttgctgcttcctattgg
ccgaaggaccgtgtcatgatcaatcgattggacagtatttgtcaggctgtgttgaagggc
aaatggcctgggactcggcgtgtgtatgatggaactgcggtggcctctttttataccact
aaactcctggacaacgcagccaacctcgcagaagaccctgcagcctcccctcagggctca
aaggtgaagaagcatgatgcagacagagaaaaggagttctcagtcaaaatcaatgaccag
gagggcagtctgaagctgaccttccagaagcagggaatgtcattaaagcgtcctctggac
ggagaggagggacctcttgctcagcagcagtatctggccaggctacaggagttacagagc
gcctctgatagcggcctgatcgactacaccaaatcacttaacagctatccacagggcatg
gccggggtgcctggtgtgagcggcatggctggcatggctggagttgccggtcagatgcat
ctaaacggagtggttgacggtcagccggtagtgaagaggagaagaggaagaaggaagaat
gtggaagggatggatctactcttcatgaacaagaacagacctcctgttatgcctgatcag
gttcccccaggttggagtgggagtgtcccaccgggtatggcacctgggcagagcatgcct
caggttgttgggcctatagacactgagagccgagtccctgtgatcaacctcaaagatggg
acgcggcttgctggagaggacgctccaaaacggaaggatctagatcagtggctaaaggag
catcccggctttgtggcagatgttggatctttcattcctggtgtgaataagatgcagttt
caagatggacggccaaagcagaaaagacatcgctgcagaaatcccaataagattgatgtg
aacagccttacgggagaagagagagtccagatcatcaacaggagaaatgcccgcaagatc
ggtggtgcatttgctccacctctgaaggatttgtgccggttccttcaggagaacccagag
tatggtgttccaccagagtgggccgacgttgtcaaacaatctggctacctcccagagagc
atgtttgaccgcatcctcactggtccaatcgtccccgaggaggtgagtagacgagggcgc
cggcccaagaatgctctgaccaaagcagcagccacagctagtgctggggccaacactgct
gctctgggactcaaccctctcctggccaacggcctccttggtggcctggatctaaccagc
ctgcaggccctccagagcatccagtctctccaactcacagctggactcattggcctgcag
cctgacgccgccaacatggctgccatgttacctgtgatgctctctggcatggctggactg
cccaacttgcttgggatgagcagtctattgggaaaacaggatgctgcgggcgccatggca
acaggtagcgaggagacggggaataagagtagcggagaatcaacagctcagacctcgagc
gcggacgtcaaagtggagaggacagagagccaaagctccacaccaagcagctccgcagcc
accaactctacccagctaagtgcttctgcctcaggccatccactggccctcaaccctcta
ctgctctccagcatgctttacccagggatgcttctcaacccaggccttaatttacctgtg
gccaatcagccgcaagctactaacactcagcccaccccaccgcctcagcccgccccctct
gaggctacgcagcaacagcccaaccaatcggaggagaagggcagggatgaaggggaggag
cctgaggaacagagggacaacagtggtccagagggctccgggaaggcggaggagtcatct
tcctcggagtctgaaagctcatcatcatcatcggaggattccgattccagtgatgaagac
tga
DBGET
integrated database retrieval system
