Astyanax mexicanus (Mexican tetra): 103046377
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Entry
103046377 CDS
T05042
Symbol
tarbp1
Name
(RefSeq) probable methyltransferase TARBP1
KO
K15333
tRNA guanosine-2'-O-methyltransferase [EC:
2.1.1.34
]
Organism
amex
Astyanax mexicanus (Mexican tetra)
Brite
KEGG Orthology (KO) [BR:
amex00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
amex03016
]
103046377 (tarbp1)
03036 Chromosome and associated proteins [BR:
amex03036
]
103046377 (tarbp1)
Enzymes [BR:
amex01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.34 tRNA (guanosine18-2'-O)-methyltransferase
103046377 (tarbp1)
Transfer RNA biogenesis [BR:
amex03016
]
Eukaryotic type
tRNA modification factors
Methyltransferases
103046377 (tarbp1)
Chromosome and associated proteins [BR:
amex03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
103046377 (tarbp1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SpoU_methylase
TARBP1
Motif
Other DBs
NCBI-GeneID:
103046377
NCBI-ProteinID:
XP_022537785
LinkDB
All DBs
Position
25:complement(24155595..24188043)
Genome browser
AA seq
1690 aa
AA seq
DB search
MSSSAARSSSSSACLLSAVISQCPDRLDRVLDSLCWTGSTWPQVERVESLTAALGQVINP
PVGFDQLMPRELLISRTQAVIWEQCVPVLRRISTGNAHFQEEGPEPDPEPGAGAGGSLDS
RGKELLHAVCGLLAVCLSVQTSDCLLEKVASLALPAFTTPDHHDHLDIDTSIEVLAVLLS
VITTSHSCSAPLALRILSSTLSGVKDLAEAQASRIIVQLWFTALKSGSSTVLLQKLWTDL
LGWFQHHGKNGADAEDAGDKDARSGADAEDAGAGPDAEDAVAKDAGAGADVKDARSGPDA
EDADAAGVTSRVLLCLTALSDHLFFTPEQTVLMKHQQGVGLQPDPWQCRTFFRVVQAGLR
HRDGVSRRRALFLLKRCVSMCEELKVEVGVGDPESLFRWTPDQSLELRGFWEDYALVLET
LEENQIHVVRPVLNRINRLVETAAANTEGRVLVDTSWLMCVYQRMFHSENKAVMKEGVNH
LLELKILQRPDVASAFSQFVVGPFMEVLAESPLYHRSPGQVVGECPEIAVKLQKFMVMFF
SSLPEKERGFVMLKLLQRLGSQHWCSVPLLFLSQALSHLPPAPLLRADGLNALRDVLRCT
MITHQVLLRGATQCFLLHTALCLIHVSAVSLDEVLGFLANFRAEESLSRGTALWRELCDW
LLANEGRFRPSDDSDGAVPETITAHCSRRLKTFLTVPASSDQTDAVPDPGEAEALARSLL
LSVDLERIRRPGQNPEENGLERLFCPLLDVLRRISTSVYLPLRKTDNSLQLLLRLLQLLN
THPETGAMNDYDKVAEAVRNLLLGVVEPVQEFILRRLSGELQELCDVDRAALYLSVVLEL
VQTYSSVPGFISNLQNNYVPKLTTNCTRILTTPSDQTPSVAGQVQKAVSMATLAALCELA
QRGVFEPESDATTSLRSLTSFFCPPSSSSSSSSSSSSSSSSVQSFNRPLLKPSTADPSAR
GPDESPVLRDWGRVAAGFIRDQWACLLYLRAEAGGSFRAAVEAVALLPSDLVLPVLDFLS
STFPQVALCEEVEEEVCVEAVCVCWKLVQALSSNAHDFWPALQAFIRLAFNHTALQMTPT
QNPHLTTCTSQITRELMELSEAKSGVFNVLIQHCCETWLPSDPKNRTDSAFQSAFNHLDL
LTEACVYGPVFRRDQRLIQEVQTYVEQLGEQCVANAVISSENRDDQFPRLCVLAFLSHLD
PSNSLHQKLMEELVQHLLKKDAAITKSKVRYYSNSMHHRVKNRVWQTLLLLLPKLTPEFV
VQSVLVPVCEAGFSSNQASVKYLIEWVLILILHQNPAHIQQLWDCFSTDQEQEKTKTSIC
TFLSVLVHLHVLLPHLEDKVAQWQRAVEVALLWCFSHNFSVRLYALLALKRVWQMEGALA
GGPAALGGLGTVVQACLRQAETMQNSGNAMKNWTKIQEHFFFSVFHPLNDYSLETILHTF
PSLSELADDEWVPVWKLEKLVNFHSSVPVRNAGRELSELQPGDWIQQDRGELEQEERWAD
VQKKIAPWRLSVQEQEPQLMAQQRAVRLGKLTNALVVVASLIDKPTNLGGLCRTCEIFGA
SALVLDSLRHVSDKQFQALSVSSELWLPLLEVKPSELTDFLQLKKREGYCIVGVEQTANS
QSLQDYSFPEKTLLLLGNEREGIDVNLLQLLDVCVEIPQQGVTRSLNVHVSAALLVWEYT
RQHLGCAQEP
NT seq
5073 nt
NT seq
+upstream
nt +downstream
nt
atgtcttcttcagcagcaagatcttcttcttcctccgcgtgtctcctgagcgcggtgatc
tctcagtgtccggacagactggaccgggttctggactcgctctgctggaccggctccacg
tggccgcaggtggagagggttgagtccctcacggccgcgctgggacaggtaataaaccca
cctgtgggctttgatcagctgatgccccgggagcttctgatcagcagaacccaggctgtg
atatgggagcagtgtgttccggttctgaggaggatttccactggaaacgcccactttcag
gaggagggaccagaaccagatccagaaccaggagctggagctggaggcagcctagatagc
agagggaaggagcttctccatgctgtgtgtggactccttgccgtttgcttaagtgtccaa
acttctgactgtcttctggagaaagtcgcaagcctcgctttacctgctttcaccacacct
gaccaccacgaccacctggacattgatacctccatagaggtgctggctgtcctgctgtca
gtcatcactacctcacacagctgctccgcccccttagctttgagaatactgtcttctact
ctcagtggtgttaaagatctggcagaagctcaggcctccagaattatcgtacagctctgg
ttcacggccctgaagtccggctcgtccaccgtgctgctccagaagctctggacggatctg
ctgggctggtttcagcatcatgggaagaatggtgctgatgctgaggatgcgggtgataag
gatgctcgttctggtgctgatgctgaggatgctggtgctggtcctgatgctgaggatgcg
gttgctaaggatgctggtgctggtgcagatgttaaggatgctcgttctggtcctgatgct
gaggatgcagatgctgcaggtgtaacgtctcgagtgctgctctgcttgactgctctatcg
gatcacctgttcttcaccccagagcagacagtgttgatgaagcaccagcagggtgtcggg
ttgcagcccgatccgtggcagtgccgaacgttcttcagggtggtccaggctggactgagg
caccgggacggcgtgtcccgcaggagggccctgttcctgctgaagagatgcgtctccatg
tgtgaggagctgaaggtggaggttggagtaggagatccagaaagcctgttcagatggact
ccagatcagagtttagagcttcgggggttctgggaggattacgctcttgttttggagact
cttgaagagaatcagatccatgtggttcgacctgtcctcaaccggatcaacaggctggtg
gagacggctgcagctaacactgaaggcagggttctggtggacacatcctggttgatgtgt
gtgtatcagaggatgttccacagtgagaataaagccgtgatgaaggaaggagttaatcac
ctgctggagctgaagatactgcagcgtcctgacgtcgcctcggctttctcacagtttgta
gtaggtcccttcatggaggtgctggcagagagcccactctaccacagatcacctggacag
gtggtgggggagtgtccggagatagcagtgaagctgcagaagttcatggtgatgttcttc
agcagtttacctgaaaaggaacgaggctttgtgatgttgaagctgctgcagcgtttgggt
tctcagcactggtgttctgtcccgctgctgtttctgtctcaggctctgtcccatttaccc
cccgcccctctactgagagcagatggcctgaacgcactcagagatgttctgcgctgcact
atgatcactcaccaggttctgctgagaggagctactcagtgtttcctgctgcacactgca
ctctgcctcatacacgtgtctgcagtgtctctggacgaggtgttggggtttctggcgaac
ttcagagccgaggagtctctgagtcgaggcacagcgctgtggagagagctctgtgattgg
ctgctggctaacgagggcagatttcggcccagtgatgattctgacggcgctgttccagag
acgatcaccgcacactgctccagacgcctaaagaccttcctcactgtaccagccagctcc
gatcagacggacgctgttccggacccgggcgaggccgaggctctggcccgttctctcctc
ctctcggtggatctggagaggatcaggagaccagggcagaacccagaggagaacggactg
gagcggctcttctgccccctgctggacgtcctgcgccggattagcaccagcgtatattta
ccgctgcgcaaaaccgacaacagcctgcagctcctcctgcgcctcctgcagctcctcaac
acacacccagagactggagcgatgaacgattatgataaggtggcggaggccgtgaggaat
ctgttactgggagtggtggaaccagttcaggagtttatactgaggaggctgagtggagaa
ctacaggagctgtgtgatgtggaccgggcggctctgtacctctccgtggttctggaactg
gttcagacctacagctcggttcccggcttcatctccaacctacagaacaactacgtcccc
aaactcaccactaactgcaccaggatcctcaccacaccttctgaccagactccgtctgta
gctgggcaggtacagaaagcggttagcatggctacgttagccgcgctgtgtgagctcgct
cagcgcggtgtgttcgaacccgagtccgacgccacaacgtcactcagatccctcaccagc
ttcttctgcccaccttcatcctcctcctcctcctcatcatcatcatcctcctcctcatcc
tcagtgcagagctttaaccggcccctgctgaagccctctacagcagatccctccgccagg
ggtccggatgagagtccggtgctgagggactggggtcgagtggcggctgggtttatccgg
gatcagtgggcgtgtctgctgtacctgcgggctgaagccgggggcagtttccgggcggcg
gtggaggcggtcgctctgctgcccagtgacctggttctgcccgtactggacttcctgtcc
tccaccttccctcaggtggcgctgtgtgaggaggtggaggaggaggtgtgtgtggaggcg
gtgtgtgtgtgctggaagctggttcaggctttaagctctaacgctcatgatttctggccg
gctctgcaggctttcatccgcctggcctttaatcacaccgcccttcaaatgacccccacc
cagaacccccacctgaccacctgcacctcacagataactcgtgagttgatggagttgtcg
gaggcgaagtcgggagtgtttaatgttctgattcagcactgctgtgagacctggctgccc
tccgacccgaagaaccgcactgactccgcctttcagagcgcctttaaccacctggatctg
ctgaccgaggcctgtgtatacggacccgtcttcagacgagatcagaggctgattcaggag
gttcagacctatgtggagcagcttggagagcaatgtgtcgctaatgctgtgatcagcagt
gagaacagggatgatcagttcccccggctctgtgttctggcgttcctgagtcacctggac
ccgtctaacagtctgcaccagaaactgatggaggagctggtccagcacttactgaaaaag
gatgcggcgataactaagtcaaaagtgcgttactatagcaactccatgcatcaccgagta
aaaaacagagtgtggcaaacgctactgctgctcctgccaaaactcacaccagagttcgtg
gttcagtctgtactggttccagtctgtgaggcgggtttctccagtaaccaggcgtccgtt
aaatacctgatcgagtgggttctgatcctgatcctccaccagaaccccgcccacatccag
cagctgtgggactgtttcagtacggatcaggagcaggagaagaccaagaccagcatctgc
accttcctgtctgtcctggtgcacctgcacgtcctgctgcctcacctggaggataaggtg
gcgcagtggcagcgggcggtggaggtggcgctgctgtggtgcttcagtcataacttcagt
gtgcggctgtacgctctgctggcactgaagcgggtgtggcagatggagggggcgctggcg
ggtgggccggcagctctggggggtctgggtaccgtggtccaggcgtgtctgcggcaggcc
gagaccatgcagaactccggcaacgccatgaagaactggaccaaaattcaggagcacttc
ttcttcagtgtcttccaccctcttaatgattatagtttagagacgatcctgcacacattc
cccagtctgtcggagctggctgatgatgagtgggttccggtgtggaagctggagaagctg
gtgaacttccactcctctgttccggtgaggaacgctggccgggagctgagcgagctgcag
cctggagactggatccagcaggacagaggtgagctggagcaggaggagcgctgggctgat
gtacagaagaagatcgccccctggaggctgagtgtgcaggagcaggagcctcagctcatg
gcccagcagagggcggtgcgcctgggcaaactcaccaacgccctggtggtggtggcatcc
ctcatcgacaagcccactaacctgggaggtctgtgtaggacgtgtgagatattcggggcg
agtgctctggttctggacagtttgcgtcacgtatccgacaaacagtttcaggccctcagt
gtatcttctgaactctggcttccactgctggaggtgaagccctctgagctgacggacttc
ctgcagctgaagaagagagaaggttactgtatagtgggagtggaacagacggccaacagc
cagagtctacaggactacagctttccagagaagaccctcctgctgctggggaacgagcga
gagggtatagatgttaatctgctgcagctgctggatgtgtgtgtggagattcctcagcag
ggagtaactcgctctctgaacgttcacgtcagcgccgccctgctggtgtgggagtatacc
agacagcacctgggttgtgctcaggaaccgtaa
DBGET
integrated database retrieval system
