Astyanax mexicanus (Mexican tetra): 103046784
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Entry
103046784 CDS
T05042
Name
(RefSeq) probable ATP-dependent RNA helicase DDX5
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
amex
Astyanax mexicanus (Mexican tetra)
Pathway
amex03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
amex00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
103046784
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
amex03041
]
103046784
03009 Ribosome biogenesis [BR:
amex03009
]
103046784
Enzymes [BR:
amex01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
103046784
Spliceosome [BR:
amex03041
]
Complex A
U1 snRNP components
U1 related factors
103046784
Complex B
103046784
Ribosome biogenesis [BR:
amex03009
]
Eukaryotic type
Pre-60S particles
Helicases
103046784
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_C_2
Cas3-like_C_2
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
103046784
NCBI-ProteinID:
XP_007252195
Ensembl:
ENSAMXG00000015550
UniProt:
A0A8B9KKU3
A0A3B1JFV6
LinkDB
All DBs
Position
5
Genome browser
AA seq
621 aa
AA seq
DB search
MPGYADRDRGRDRGYGSSGPRFGSGRSGPPTSKFGNPGERLRKRHWNLDELPKFEKNFYK
EHPDITRRSMQEVEQYRRAKEVTVKGRDCPKPVMKFNEATFPNYVMEVINKQAWSEPTPI
QAQGWPLALSGKDMVGIAQTGSGKTLAYLLPAIVHINHQPFLEHGDGPICLVLAPTRELA
QQVQQVAAEYGRASRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLEAGKTNLR
RCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKEYVQI
NIGALQLSANHNILQIVDVCNDGEKDDKLIRLLEEIMSEKENKTIIFVETKRRCDELTRR
MRRDGWPAMGIHGDKSQQERDWVLNEFKYGKACILIATDVASRGLDVEDVKFVINYDYPN
SSEDYIHRIGRTARSQKTGTAYTFFTPNNMKQANDLISVLREANQAINPKLLQMAEDRGG
RSRGGRGGYKDDRRDRYSSGGRRDFGSYRDRDSDRGYNSGPKVQNGGYNGGNSYNKGSGS
NNSYSSNGYGNGQANYGNGGNPPSAFGSQNFQNQPFQGNQAPAQNGMNHPPFPFNPPQPP
QPHQQPPQPMVPYPMAPAFPQ
NT seq
1866 nt
NT seq
+upstream
nt +downstream
nt
atgcctggatatgcagacagagatcgtgggagagataggggctatggcagtagtggtccc
aggtttggctcgggtcgtagcggccctcctactagtaaatttggcaaccctggcgagagg
cttcgcaagagacactggaatctggatgagcttcccaaatttgaaaaaaacttctacaag
gagcaccctgatatcaccagaaggtccatgcaagaggttgaacagtaccggagagccaaa
gaagttacagtgaagggaagagattgcccaaagcctgtcatgaagttcaatgaagccacc
ttccccaattatgtgatggaggtcatcaacaaacaggcatggtctgagcccacccctatt
caagcacagggctggccacttgccctcagtggaaaagacatggtcggcatcgcccagacc
ggctctgggaaaactctggcatacctgttgccggccattgtgcatattaaccaccagcct
ttccttgagcatggagatgggcccatttgtctagtgctggcacctacccgtgagctagct
cagcaagttcagcaggttgcagcagaatacggaagagcctcacgcttgaagtcaacctgc
atatatggaggggcccccaaaggaccacagatcagggatcttgaaagaggtgtggagatc
tgcattgccacacctggtcgtctgattgattttctagaggcaggaaagaccaatctgcgc
cgctgcacctacttggtgctggatgaagctgaccgcatgctggacatgggctttgagccg
cagatccgcaaaattgtagatcagatccgaccagacaggcagacactcatgtggagtgct
acctggcctaaagaggtgcggcagctggcagaggattttctaaaggagtatgtccagata
aacatcggagctctgcagctcagcgccaaccacaacatcctgcagattgtagatgtctgc
aatgatggagaaaaggatgacaaactgatccgcttgctggaggagattatgagcgagaag
gagaacaaaaccatcatctttgtggagacaaagaggaggtgtgatgagctcactcggagg
atgaggagagatggatggcctgccatgggaattcatggagacaaaagtcaacaggagaga
gattgggttctgaatgagttcaaatacggcaaagcctgcatccttatcgctacagatgtg
gcctcccgtggattagatgtggaggatgtgaaatttgtcatcaattatgactaccctaac
tcctctgaggattatatccaccgaatcgggcgtacggcccgcagtcagaaaactggcacg
gcctacaccttctttacgccgaacaacatgaaacaggccaacgacctcatctctgtcctc
cgtgaggccaaccaggccatcaaccccaaactgctgcaaatggccgaggaccgaggaggt
cgttctagaggtggtcggggaggctacaaggatgaccgtcgggaccggtattccagtggg
ggtaggagagatttcggtagctatagggatagagattctgacaggggttacaatagcgga
ccaaaggtgcagaacggtggttacaatgggggcaacagctacaataaaggtagtggtagc
aacaatagctacagcagtaatggatacggcaatggacaggccaactacggcaacggggga
aatcctccaagcgccttcgggagtcagaatttccagaaccaaccattccaggggaaccaa
gctccggcccagaatggaatgaatcaccctcctttcccctttaacccgcctcagccccca
caacctcaccaacaacccccccagcctatggtgccctaccccatggcccctgcctttccc
cagtag
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