Astyanax mexicanus (Mexican tetra): 103046976
Help
Entry
103046976 CDS
T05042
Symbol
lrrc4ca
Name
(RefSeq) leucine rich repeat containing 4C, genome duplicate a
KO
K07523
netrin-G1 ligand
Organism
amex
Astyanax mexicanus (Mexican tetra)
Pathway
amex04514
Cell adhesion molecules
Brite
KEGG Orthology (KO) [BR:
amex00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
103046976 (lrrc4ca)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_8
LRR_4
LRR_5
I-set
Ig_3
ig
V-set
LRR_14
Ig_2
LRR_9
LRRNT
Ig_6
DUF7617
Sp38
Podoplanin
DUF4293
Syndecan
DUF6821
Motif
Other DBs
NCBI-GeneID:
103046976
NCBI-ProteinID:
XP_049331174
Ensembl:
ENSAMXG00000024863
UniProt:
W5LRM6
LinkDB
All DBs
Position
2:60829947..60979931
Genome browser
AA seq
647 aa
AA seq
DB search
MLNKMTFSQQQQTMRGPRWNRALSDPLFVLLLALQLLVVAGLVRAQTCPSVCSCSNQFSK
VICTRRGLRDVPDGISTNTRYLNLQENLIQVIKVDSFKHLRHLEILQLSKNHIRSIEIGA
FNGLASLNTLELFDNRLTTIPNGAFEYLSKLKELWLRNNPIESIPSYAFNRVPSLRRLDL
GELKRLSYISEGAFEGLSNLRYLNLGMCNLKEIPNLIPLVRLDELEMSGNQLSVIRPGSF
KGLVHLQKLWMMHAQIQTIERNAFDDLQSLVELNLAHNNLTLLPHDLFTPLHHLERVHLH
HNPWNCNCDILWLSWWLKEMVPANTSCCARCSTPTSHKGRYIGELDQNYFHCYAPVIVEP
PADLNVTEGMAAELKCRASSLTSVSWITPNGSIMTHGAYKVRISVLNDGTLNFTNVTMQD
TGTYTCMVSNSAGNTTASATLNVSSTENSSFSYFTTVTVETIEPAHDEGHTTVQQKVGPT
PSSGVWETPSTPSSTTTTTARTPMSTKTTDKSYTIPVTTLGDGSLNTLDEVMKTTKIIIG
CFVAITLMAAVMLIIFYKMRKQHHQQNHHAPTRTIEIINVDEDCVTGGPTMEGHLTLPPL
EHEHLNHYNTYKTAYNHASTINSIHSSAHEPLLIRASSKDNVQETQI
NT seq
1944 nt
NT seq
+upstream
nt +downstream
nt
atgttgaacaagatgaccttctcccagcagcagcagacgatgagaggtcctaggtggaac
cgggccttgtctgacccgttgttcgtgctgttgctggccttgcagcttctggtggttgct
ggcttggtgagagctcagacctgcccgtccgtctgctcgtgcagtaaccagttcagcaag
gtcatctgcacgcgtcgcggcctgcgagatgtgccagacggcatctccaccaacacccgg
tacctgaacctgcaggaaaacctaatccaggtgatcaaggtggacagcttcaagcactta
cggcacctggagatcctgcagctcagcaagaaccatatccgtagcatcgagattggagcc
tttaacgggctggccagtctaaacacgctggaactattcgataacaggttaaccactatc
ccaaatggagcatttgagtatctgtcgaagttgaaggaactatggctaaggaacaatccc
attgagagcataccgtcctatgccttcaaccgagtgccctcgctacgaaggctggacttg
ggtgaactgaaaaggctctcgtatatttcggaaggtgctttcgaaggactgagcaacctg
cgttacctgaacctcggtatgtgcaacctgaaagagatccctaacctaattccactggta
cgactggatgaactggagatgtcggggaatcagctctcggttatccggccggggtctttc
aaagggcttgtccacttgcagaaactgtggatgatgcacgctcagatccagaccattgaa
aggaacgcctttgacgatcttcagtcgctggtggagttgaatttggctcacaataacctt
accctgctccctcacgacctcttcacaccactccaccacttggagagggtgcacttgcac
cacaacccatggaattgcaactgtgacatcctgtggctcagttggtggctgaaagaaatg
gtaccggccaacaccagctgctgtgctcgctgcagtactcctaccagccacaaggggcgc
tacattggcgagctggatcaaaactatttccactgttacgcgcctgttattgtggagcct
cctgctgatctgaatgtgacagaaggcatggcagcagaactgaaatgccgggcgagctca
ctgacctcggtcagttggattacacccaatgggtcaatcatgactcacggagcgtacaag
gtgcgcatttcagtgctcaatgacgggacattgaactttacaaatgtcacaatgcaggac
acagggacgtacacgtgtatggttagcaactcagcagggaacaccacagcctctgctacg
ctaaacgtgtcctcaacagagaacagcagcttcagctacttcaccacggtgacggtggag
acgatagagccagcgcacgacgaagggcacaccacggtgcagcagaaggtgggtcctact
ccttcctctggcgtgtgggagacgccttctactccttcatccaccacaaccacaacggcc
cggacgcctatgtccaccaagaccaccgacaaatcctacaccatccccgtcacaacgctg
ggcgacggctccctcaacactctggatgaagtaatgaagaccaccaagatcatcatcggc
tgctttgtggccatcacactgatggccgcagtcatgctgatcatcttctacaaaatgcgc
aaacagcatcaccagcagaaccaccacgcgcccacgcgcaccatcgagatcatcaacgtg
gacgaagactgcgtcaccggcgggccaaccatggagggtcacctgaccctgccacccctc
gagcatgagcatcttaaccactacaacacctacaagacagcatacaatcacgcctccacc
atcaactccatacacagctctgcacatgaacctttgcttattcgggccagctcaaaagac
aatgtacaagagacccaaatctga
DBGET
integrated database retrieval system
