Astyanax mexicanus (Mexican tetra): 103047233
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Entry
103047233 CDS
T05042
Symbol
trub1
Name
(RefSeq) probable tRNA pseudouridine synthase 1
KO
K03177
tRNA pseudouridine55 synthase [EC:
5.4.99.25
]
Organism
amex
Astyanax mexicanus (Mexican tetra)
Brite
KEGG Orthology (KO) [BR:
amex00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
amex03016
]
103047233 (trub1)
Enzymes [BR:
amex01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.25 tRNA pseudouridine55 synthase
103047233 (trub1)
Transfer RNA biogenesis [BR:
amex03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
103047233 (trub1)
Prokaryotic type
103047233 (trub1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruB_N
TruB_C_2
Pus10_C
Motif
Other DBs
NCBI-GeneID:
103047233
NCBI-ProteinID:
XP_007259335
Ensembl:
ENSAMXG00000015845
UniProt:
A0A8B9KD67
LinkDB
All DBs
Position
15:32715845..32719412
Genome browser
AA seq
299 aa
AA seq
DB search
MANVNSVSLSRLNSLNGIFSIYKKQGPTSADVLNTLKNKLLKEAGVANPNCRKRKKQAVK
IGHGGTLDSNASGVLVVGIGEGTKMLTTMLAGSKKYTAVGELGKATDTLDCTGSVVQENN
YDHITREAFEEKLKEFTGEIMQVPPLYSALKKDGKRLSVLLKQGQEVEAKPARPVTVYNL
TLQDFNPPLFTLDVECGGGFYVRSLVDDLGKALSSCAHIRELIRTKQGQFTLEEHVLREE
RWTFQDISQSLQPCPEPAPQQNNSKKNKPHRKPTQPGSESSAGDHNHITAEGASADHND
NT seq
900 nt
NT seq
+upstream
nt +downstream
nt
atggctaatgtcaacagcgtttctttatctaggttaaactctctaaacgggattttctcc
atatataagaaacagggaccgacctctgctgatgtgttaaacacgcttaaaaacaagctt
ctgaaagaggctggagtagccaatccgaactgtcgaaagaggaagaaacaagctgtaaag
attggccatggtgggaccttagacagcaatgcttctggtgttcttgtggttggaataggt
gaagggaccaagatgctcaccacaatgcttgctgggtctaagaaatacactgcggttgga
gagctgggcaaagcaactgacactctggattgtacaggaagtgttgttcaagagaataac
tatgatcacattacaagagaggcttttgaagaaaagctgaaggagtttactggggaaatc
atgcaggtccctcctctgtattcagcactgaaaaaagatggcaagcgtctttctgtttta
ttaaagcaagggcaagaagtagaggctaagcctgcacgaccagtaacagtttacaacctc
acactacaagacttcaatccaccactattcactttagatgtcgagtgtggtggagggttt
tatgtcagaagcctggtggatgatctgggaaaagctctgtcctcgtgtgctcatattcgg
gaactgattagaactaagcagggtcagtttacgctggaggaacatgtgttgagggaggaa
cgctggaccttccaggacatttcccagtccttacagccctgcccagagcctgcgcctcag
cagaacaacagcaaaaaaaacaaaccacacaggaaacccacccagcctggttctgaaagt
tctgctggagatcacaatcacatcacagctgaaggtgccagtgcagatcacaatgactag
DBGET
integrated database retrieval system
