Astyanax mexicanus (Mexican tetra): 103047523
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Entry
103047523 CDS
T05042
Name
(RefSeq) pre-mRNA 3'-end-processing factor FIP1 isoform X1
KO
K14405
pre-mRNA 3'-end-processing factor FIP1
Organism
amex
Astyanax mexicanus (Mexican tetra)
Pathway
amex03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
amex00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
103047523
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
amex03019
]
103047523
Messenger RNA biogenesis [BR:
amex03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
103047523
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fip1
TSX
Motif
Other DBs
NCBI-GeneID:
103047523
NCBI-ProteinID:
XP_049321375
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Position
1:3029692..3050624
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AA seq
544 aa
AA seq
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MVIDSRSAVNRITERSMASAAAAAEEEEESQQVEDEEHWLYGADENSKNPSVNDETREKE
EPAEELSADPEDKNEAEQATKSAEDEEEEDSDSDDEDDVKVTIGNIKTGAPAYMGSGINL
NIKPVRGYGVTATNKLQCKGVVDLEAPGFNGLHAGEVEADTYEDKPWRKPGADLSDYFNY
GFNEETWKAYCEKQRRLQLGLDPCVPPNFENKITVQQGRTVSLEKDPESPAPKLDYKTEF
PPQVISASSRLKAGPPPNRKMGGTIDVIGGQMGTIRRVEGRRREIPEQNPIQVLGDHGNK
PQPVTPPTAPPPIPIGVPPPHFLHRPPPVSGIPPPMQPPGIPPPALPGIFPPPHVPPPNL
MMPPVNSRCPTSGYGSRAPPPFGYSSGEPNFISYPPVSSSHMPWGGVMEKNVGGGVGGHW
EHSRRDREREREREAERRERERTPTANEYGEDDRYRYYARESEREYERFHHTRASSRGRE
EHSGRERRHREKEESGKHKSSKRKQHEDDGDGHRRHKHKKNKRSKEDRAAEDVCGLGDEH
EPKD
NT seq
1635 nt
NT seq
+upstream
nt +downstream
nt
atggtaatcgattcccgatcagcagtgaatcggatcacagagcgcagtatggccagtgcg
gcggcggcggcggaggaggaggaggagtcccagcaggtggaggatgaagagcactggctc
tatggggcagatgaaaactccaagaatccgtctgtaaatgatgagacgagggagaaagag
gaaccagctgaggagctcagtgccgacccagaggacaagaatgaagcagagcaggccacc
aaaagtgcagaggatgaagaagaggaagatagtgacagtgatgatgaggatgatgtcaag
gttaccatcggcaacatcaaaacaggagctccggcttacatggggtctggaatcaacctt
aacatcaagccagtgagaggatatggagtcacagctaccaataagcttcagtgtaaaggt
gtggtggatctggaggctcctggttttaacgggctgcatgcgggcgaggtggaggcggat
acgtatgaagacaaaccctggagaaaaccgggagctgatctgtcggactattttaactac
ggttttaatgaggagacgtggaaggcgtactgtgagaagcagcggcggcttcagctcggc
ctggacccctgcgttccaccaaactttgagaataaaatcaccgtccagcagggtagaacg
gtcagtttggagaaggaccccgagagcccagcgcctaaactggactataagactgagttc
ccaccacaggttatatcagcatccagtagactgaaagctggacctccacccaacaggaaa
atgggcgggaccatcgatgtgattggcggacagatgggaaccattcgtagggtggagggg
cgtcggagagagatcccagaacagaaccccattcaggttcttggggaccatggcaacaag
ccacagcccgtgactcctcccactgccccgcctccaattcctattggagttcctccaccg
cacttcctgcaccgcccacctcctgtgtctggaattcccccacccatgcagcccccaggt
attcctccacctgctcttccaggtatattcccgcctcctcacgtccctccacccaacctg
atgatgccacctgtcaacagccgatgtcccacttcagggtatggtagcagagccccgccc
ccttttggatacagcagtggagagccgaacttcatcagctacccgccggtgtcgtcctcc
cacatgccgtggggtggagtgatggagaagaacgtagggggaggagtaggaggacactgg
gagcactcccgacgcgacagggagcgcgagagagagagagaggcagaacgacgagagaga
gagagaacgcccaccgcaaacgaatacggtgaggacgaccgctatcgctattatgcccgc
gagagcgagagagagtacgagcgcttccatcacactcgtgccagcagtcgagggagagag
gagcattctgggagggagaggcggcacagggagaaggaggagagcgggaaacacaagtct
tccaaacgcaaacagcacgaggatgacggggacggccaccgccgacacaaacacaaaaag
aacaaacgcagtaaagaggacagagcggcggaggacgtctgcggactgggggacgaacac
gagcccaaggactga
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