Astyanax mexicanus (Mexican tetra): 103047592
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Entry
103047592 CDS
T05042
Symbol
smarcd1
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1
KO
K11650
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D
Organism
amex
Astyanax mexicanus (Mexican tetra)
Pathway
amex03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
amex00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
103047592 (smarcd1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
amex03021
]
103047592 (smarcd1)
03036 Chromosome and associated proteins [BR:
amex03036
]
103047592 (smarcd1)
Transcription machinery [BR:
amex03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
103047592 (smarcd1)
Chromosome and associated proteins [BR:
amex03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
103047592 (smarcd1)
PBAF complex
103047592 (smarcd1)
GBAF(ncBAF) complex
103047592 (smarcd1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIB
Motif
Other DBs
NCBI-GeneID:
103047592
NCBI-ProteinID:
XP_007251570
Ensembl:
ENSAMXG00000004577
UniProt:
A0A8B9KKG6
A0A3B1IS59
LinkDB
All DBs
Position
24:564415..581648
Genome browser
AA seq
529 aa
AA seq
DB search
MAARGGFQSGAPGAGGAGGGAGGGGGGGAGGGGGGMGPGPPVPGAGPGMGPGTPTGRMGP
AGAQNHLYRSPMAGPGYPRPGMPPANRMTPQGPSMGPPGYGASPVSRPGMPVMDPSRKRP
APAQIQQVQQQNRNQHAKKKKMADKILPQRIRELVPESQAYMDLLAFERKLDQTIMRKRL
DIQEALKRPIKQKRKLRIFISNTFNPAKPDAEDGEGTVASWELRVEGRLLEDTAVSKYEA
TKQKRKFSSFFKSLVIELDKDLYGPDNHLVEWHRTPTTQETDGFQVKRPGDVGVRCTVLL
MLDYQPPQFKLDPRLARMLGIHTQTRPVIIQALWQYVKTHKLQDPHEREFINCDKYLQQI
FETQRMKFSEIPQRLHALLMPPEPIIINHVISVDPNDQKKTACYDIDVEVDDTLKTQMNS
FLLSTASQQEIAGLDNKIHETIETINQLKTQREFMLSFARDPQGFINDWLQSQCRDLKTM
TDVVGNPEEERRAEFYFQPWAQEAVCRYFYSKVQQRRQELEQALGIRNT
NT seq
1590 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgcgtggaggttttcagtccggggcgcctggagctggaggagccggcggagga
gcaggtggaggcggcggcggtggagctggaggagggggtggaggaatgggacctggacca
ccagtaccgggcgctgggccgggcatgggcccaggcacgccgacagggaggatgggaccc
gcaggcgcgcagaatcacctgtaccgctccccgatggcggggcccggttacccgagacca
gggatgccgcctgctaatcgtatgacccctcagggcccgtccatggggcctccaggttac
ggtgccagccccgtgtcccgcccgggcatgccggtcatggatccctcccgcaagagaccc
gccccagcacagatccagcaggtccagcagcagaaccgcaaccaacatgccaagaagaag
aagatggctgataaaattctacctcagagaatcagagagctggtcccggagtctcaggct
tatatggatctgttggcgtttgagaggaagttggatcagaccattatgcggaagagactc
gacatccaggaggcgctaaagagacccatcaagcaaaagcgaaagctgcgcatttttatc
tccaacactttcaaccctgccaagcctgacgctgaggacggtgaggggactgtagcatcg
tgggagctgcgggtggagggcaggctgttggaggatactgctgtctccaaatacgaggcg
accaagcagaagaggaagttctcctcgttcttcaagtctttagtgatcgagttggataaa
gatctttatgggccggacaatcatttggtagagtggcacagaacacccactactcaggag
accgatggcttccaggtgaaacggccgggagacgtgggcgtgcgctgtaccgtcctcctc
atgctcgactaccagcctcctcagtttaagctggaccccaggctggcccgcatgttgggc
atccacacccagacccggccggtcatcatccaggctctgtggcagtatgtaaagacccac
aaactacaggacccccacgagcgcgagttcatcaactgtgacaagtacctccagcagatc
tttgagacccagaggatgaagttctctgagatccctcagcgtctgcacgctctactgatg
cctcctgagcccatcatcattaaccatgtgatcagcgtggacccgaatgatcagaagaag
acggcctgctatgatatagatgtggaggtggacgacaccctgaagacccagatgaactcc
ttcctgctgtccaccgccagtcagcaggagatcgcaggcttagataacaagatccacgag
accatcgaaaccatcaaccagctgaagacccagcgggagttcatgctgagcttcgcccgc
gatcctcaagggttcatcaatgactggctgcagtcgcagtgcagagacctgaagacgatg
accgatgtggttggaaacccagaagaagagagaagagctgagttctacttccaaccgtgg
gctcaagaagctgtgtgtcgctacttctactccaaggtccagcagagaagacaggagctg
gagcaggccttgggcatcaggaacacttaa
DBGET
integrated database retrieval system
