Astyanax mexicanus (Mexican tetra): 107196809
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Entry
107196809 CDS
T05042
Symbol
srfb
Name
(RefSeq) serum response factor b isoform X1
KO
K04378
serum response factor
Organism
amex
Astyanax mexicanus (Mexican tetra)
Pathway
amex04010
MAPK signaling pathway
Brite
KEGG Orthology (KO) [BR:
amex00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
107196809 (srfb)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
amex03000
]
107196809 (srfb)
Transcription factors [BR:
amex03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
MADS-box responders to external signals
107196809 (srfb)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SRF-TF
Motif
Other DBs
NCBI-GeneID:
107196809
NCBI-ProteinID:
XP_022540358
Ensembl:
ENSAMXG00000036408
LinkDB
All DBs
Position
7
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AA seq
600 aa
AA seq
DB search
MLSSQAGSALSGNGSASGNSAAVVHGAVVVGSSGLRPGLARTGAQTVAGVNVAAFGGAPV
GMLGGNGPGRGGVRAGNGGGGGLSAQVGLGALGAGLVGIPGRFDRDKEGGPQGCSASDAD
SDSGDDDEPMAGDSRRGVKRERAEMESAMPGQEAGVPPGGYGVVAGGVAGAKPGKKTRGR
VKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRKLQ
PMITSETGKALIQTCLNSPDSPPRSDPSTDQRMSATGFEETDLTYQVSESESLGETKDIL
KPAFTVASLPGSTSAQPTVPTTSTTMQVSSGPSFPITNYLAPVSASSSSIANTNGTVLKS
AATSGGVMQIPGGFTFMSAGTPFPPGTPAIPLGQLQQHSLALQGQQGQALTAATATATQT
AQGQQAVFRLPAAAVSLTGGGMAQQLQAIQVQPSTQTNSVSNDSGSPEISQTSTASTATV
SLPATIVTSSVPTSVAGHMMYPSPHTLMYASAPTLTDGGLAVLNAFSQSASAMQVSHAQA
QDTGAVPQVFLTAPPGTVQIPVSAVQLHPMVIGQQSSGSSSNLTELQVVNLDATQNTKSD
NT seq
1803 nt
NT seq
+upstream
nt +downstream
nt
atgttatccagccaggctggctcggcgttgagtggaaacgggtcagcgtcagggaacagc
gcggcggtggtacacggggctgtggtggtgggcagcagcgggcttcggccgggactcgcg
cggacaggcgctcagactgtagccggggtgaacgtcgctgcattcggaggggctcccgtg
ggaatgctggggggaaacgggcccgggagaggcggcgtcagagccgggaacggcggtggc
ggcgggctcagcgcacaggtgggcttaggggctctgggcgcagggttagtggggatcccc
ggtcggtttgaccgggataaagaagggggtccacaggggtgcagcgcctccgacgcggac
tccgattctggggacgacgacgaacccatggctggagacagccggaggggggtgaagcgg
gaaagggccgaaatggaaagtgccatgcccggccaggaggctggcgtgcccccggggggt
tacggtgtggtggccggcggagttgctggagcaaagccaggcaagaaaacacgtggacgc
gttaagattaagatggagttcatagacaacaagttgcggcgatacacaactttcagcaaa
agaaagacgggcatcatgaaaaaggcatatgagctgtccacgctaacaggaacacaagtc
ctgctgctggtagccagtgaaacaggccatgtttacacttttgccacacgcaagctccag
cccatgatcaccagcgagacggggaaggctctgatccagacgtgtctgaactctccagac
tcccctccccgctctgatccatccacagaccaacgcatgagcgccacgggctttgaggag
acagaccttacctatcaggtttctgaatcagaaagcctcggtgaaaccaaggacattctg
aagccagcgtttacagtcgccagcttaccgggcagcaccagtgcccagcctacagtgccc
acaacctccaccaccatgcaagtgagcagcggaccctctttcccaatcaccaactacttg
gcccctgtgtctgccagcagcagcagcattgccaacactaacgggactgtactaaagagc
gcagccacctccggaggggtcatgcagatccctggtggcttcacctttatgtcggcaggc
actcctttcccccctggaacccctgctattcccctggggcagctgcagcagcactctctg
gctctccagggccagcagggccaggccttgaccgctgccaccgctacagccactcagacc
gcacaaggccagcaggctgtgtttcgcctccctgctgctgcagtctctctcacaggagga
ggaatggcccaacagctccaagccattcaggtgcagcccagcacccagaccaactcagtc
agcaacgacagcggtagcccagagatctcccagaccagcactgcctccacagctacagtc
agtctcccagcaaccatcgtcacgtcgtcagtgcccacctcagtagcaggtcacatgatg
taccccagcccccacacactcatgtacgcctctgcccctacgctgaccgatggtggcctg
gctgtactgaacgctttctctcagagcgcctctgccatgcaggtgtcccatgcgcaggca
caggatacaggtgctgttcctcaggtgtttcttacagcgccccctggcacggttcagatc
cctgtttcagcagtgcagctacacccaatggtgattggtcaacagtccagcggcagcagc
agtaatctgaccgagcttcaggtggtgaatctggatgccacacagaacaccaagagtgat
tga
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