Astyanax mexicanus (Mexican tetra): 107197306
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Entry
107197306 CDS
T05042
Symbol
rbbp6
Name
(RefSeq) E3 ubiquitin-protein ligase RBBP6 isoform X1
KO
K10624
E3 ubiquitin-protein ligase RBBP6 [EC:
2.3.2.27
]
Organism
amex
Astyanax mexicanus (Mexican tetra)
Brite
KEGG Orthology (KO) [BR:
amex00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
amex04121
]
107197306 (rbbp6)
Enzymes [BR:
amex01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
107197306 (rbbp6)
Ubiquitin system [BR:
amex04121
]
Ubiquitin ligases (E3)
U-box type E3
107197306 (rbbp6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DWNN
zf-CCHC_2
U-box
zf-C3HC4_3
zf-C3HC4_2
zf-CCHC
zf-RING_UBOX
zf-RING_5
zf-RING_2
zf-C3HC4
zf-C3HC4_4
Motif
Other DBs
NCBI-GeneID:
107197306
NCBI-ProteinID:
XP_022542089
LinkDB
All DBs
Position
19:13496964..13513609
Genome browser
AA seq
1775 aa
AA seq
DB search
MSCVHYKFSSKLNYDTVTFDGLHITLTELKRQIMGREKLKAADCDLQITNAQTKEEYTDD
GALIPKNSSVIIRRIPIGGVKAASKTFVIDRSEPSSGSSKAMDDPPTISLAQLSKTANLA
EANASEEDKIRAMMSQSNHEYDPIHFTKKLGPPPPNYTCFRCGKNGHYIRNCPTNGQDKS
FEAPQRVKRSTGIPRSFMMEVDQSMKGAMLTNTGTYAIPTIDAEAYALGKKEKPPFLPKE
QSSSSEDEDPVPDELLCLICKDLMTDAVVIPCCGNSYCDECIRSNLLESEEHTCPTCNQS
EVSPDALIANKFLRQAVNNFRNETGYTKRIRKAAAAAAATAQSQPRLQRPVQTLRPPNSR
QQDPLLANVPRPAAANTPPAESSPVTVNQAPGTPPTGASSSAARAGGRSPSLSPPPQTSK
QEEPVISKETEVQPQATAPAPAAAAPPETLLPTPVIPKGYHVPVINQQHSLPLPIPRPGP
PRPSGPRSSGPRPSWDPPSNRGRSASERPPRQQVPPVQPPPVVPPVYVPPLFPPPQHAMP
QPPSVIPQQFPMQFPTGQQPGPPFTVPPPGFPPAPANVPAPWVQPGTQPPLPNPLPSMSN
APFLSKEEFYRQQRRMKEDPHCRFVTREKSKLEEFTNDFAKELLEYRKIQKERRRSYSRS
KSPYRGSSYSGSSYSYSKSRTRSRSPRSYSRSLSRSRSRSRSRSRSRSRSYSRSPYSRRG
RRRSQSYRSRSRTPPYHRSRTRSPSFRGREAGMSGIYRSRSRSPHYRGHTPGKKPLSGPQ
VETDRKYSARYREQVPPYDAKACYGRAVDHNNPSERESLRQWERDLREWYETYFKDFEAS
QGSQIRGRGQGREPYSPEHYGRYGHRDGSPYARGRREDYPPHSQGHGVPPRGRPMMYQEK
CPDKFGHFHANNAAVGRGMNKEPQKTAKEREPSTSTAVDSKSLKHKKHRKKRRLDDGDIF
SHSDSMDEFKKDERKGESMMNSTRDDATPVRDEPMDSTSLPYKSSSDKERKERTKSKIEK
VKRKVDSGTQKKEGSSKTFKSVKEKDVDASRDKMTSSDPPIKRIKEEPSQKTDASKPHSS
EKIMLPRKLMQSRPVKHHQELKPVKDELKIKKEVVKDSQVKTEKSSKDGKPKLEKPVKTE
EKVSTKTGDVKVEKRKRKDDKPGIKEPEVPLTKSPRAESADVARGSPKPKPKPKVEGEKP
VEKEKTAIPSLMDIKPEPVRKIKLNREIGKRITSTDQLPTEDSGVAVGKNKVDQKSKTRI
RRRVRAPDGSGSLLVDYTSTSSTGGSPIKRHPDEKLDLKKTVVKTLEEYTNDSSTPAEDE
IVMIQVPRSKWEKEDYESEDDDSKTAAATTSANTGPSASGENAASKSSDKEADKTANASK
DTNTETKPAKDLSSSEVETDRDKESEKERERVRERDRSASDHESSDKRKAGTVSLDRGSD
HSSERSSSSQSSRDRPSDRSASSSRKPLSREVNTSLPERKPDHRATTRDHSESWQREPKP
REPLRRKDSPPLSSSRGSKEHDVLTDVGKRAPAVSQDSKRTDNSPSGEKRATAQSQPALE
SKRPAPEEHKTDRQLQSLRHADGRSTKDRDHVVHKPSHRTASPDSKTEAERAGAHPERDH
PKVKPPSIRSMRLSSDLTRETDEAAFVPDYSESESEASDPENKAEHKDRGRDSSASPAQS
RSASPSGSHAHSSSPSSPGSQDSKKRKKDKKDKKDKKKHKKHKKHKKHKKHTSNELESEA
KGQKHKHKKKKSKKSKDKEEKDERVKEEPTDKAPV
NT seq
5328 nt
NT seq
+upstream
nt +downstream
nt
atgtcttgtgttcattataagttttcctccaaactcaactatgacacggtgacgtttgat
gggctgcacatcacgctgaccgagctgaagcggcagatcatgggccgggagaagctgaag
gccgcagactgcgacctacagatcaccaacgcccagactaaagaggagtacactgatgat
ggggcacttatccctaaaaactcctcggtcatcatcaggcgcatcccgattggtggagtt
aaagctgccagcaaaacgtttgtcattgatcgatctgaaccctcaagtggatcttcaaaa
gcaatggatgatcctccaaccatttcgctggcccagctttccaagaccgctaatcttgcc
gaagcaaacgcttctgaggaagacaaaatcagagcgatgatgtctcaatccaatcatgag
tacgaccccattcactttacgaaaaagcttggacctccccctccaaactacacctgcttt
cgctgtggaaagaatggacactacatcagaaactgcccaaccaatgggcaggataaaagt
ttcgaggcccctcagcgggtcaaaaggagtactggaattccccgcagcttcatgatggag
gtggaccagtccatgaaaggagccatgctgaccaacactggaacttacgccatccccacc
attgatgcggaggcgtatgcgcttggaaagaaggaaaagcctccttttcttcccaaggag
cagtcatcatcctctgaggacgaagacccagtgcccgatgagctgctctgtctgatctgt
aaggatttgatgactgacgctgtggtaatcccctgctgtggaaacagctactgtgacgag
tgtattcgatcgaatttgctggagtcagaagaacacacgtgccccacctgtaaccagtct
gaggtttcccctgatgctttgattgccaataaattcttacgtcaggctgtgaacaacttc
aggaatgaaacgggctacacaaagagaatccgcaaagctgctgctgctgccgccgccact
gcccaaagtcaacctcgactgcagcgcccagtccaaacactcagacccccaaactcccgc
cagcaggaccctcttttggccaacgttcctcgccctgcagccgccaacaccccccctgct
gaaagtagccctgtgaccgttaaccaggcccccggcacaccccctaccggagcgagttcc
tctgcagccagagccggtggcaggagcccatctctgtctcctccacctcaaaccagcaaa
caagaggagcctgttatatcaaaagagactgaggttcagccacaagcaactgcacctgca
cccgcagctgcggcaccacctgagactctgctgccaaccccagttattccaaagggatac
catgttccagtgatcaaccaacaacattctttgcctctccccattcccagaccaggacca
ccaagaccgagtgggcctaggtcatctggaccccgaccttcatgggatccgccttcaaac
cgtggccgttctgctagtgagcgccccccaaggcagcaggtcccaccagttcaacctcct
cctgtggttcctcctgtatacgttcctcctctgtttcctcctccacaacacgccatgcca
cagccccccagcgtgattcctcagcagttcccaatgcagttccccacaggccagcagcct
gggcctcccttcacggtgccccctccagggtttcctccagctccggctaacgttccggct
ccatgggtacagccaggcactcagccacctctgccgaatcccttgccctccatgtccaat
gcaccctttttgtctaaggaggagttctataggcagcagaggcgcatgaaggaagatccc
cactgtcgattcgttaccagggagaagtcgaagcttgaagagttcaccaatgactttgcc
aaagagctactggaatacagaaaaatccaaaaggaaaggagacggtcctattccaggtcc
aaatctccataccgtgggtcttcctacagcggttcatcctactcctactcaaaatctcgc
actcgttcaagatcccctcgctcctactctcgttctctgagccgatcacgctccaggtca
cgttcccgctctcgttctcgctctcgttcctattctcgctctccttactcgcgcaggggc
cgcaggcgaagccaaagctacagatctaggtcccgtacaccgccctaccatcgctcccgc
acccgctctccttcatttagagggcgagaggcagggatgagcggcatttaccgttcccgc
tccaggtcaccgcattacaggggccatactcccggcaagaaacctctttctggacctcag
gtggaaacggatcgcaagtactcagccaggtacagggagcaggtccccccttatgatgcc
aaggcctgctatggcagagcggtggaccacaataacccaagtgaaagggaaagcttacgg
cagtgggagagggatctcagagagtggtacgagacatacttcaaagactttgaggcttca
cagggcagtcaaatcagaggtcgtggtcagggcagagagccatattctcctgaacattat
ggtcgttatggacaccgagatggctctccttatgccagagggcgacgtgaagactatccg
ccccactcccaaggacatggcgttcctccaagaggtcgtccaatgatgtaccaagagaaa
tgtccggataaatttggccacttccatgccaacaatgcagcagttggtcgaggtatgaat
aaagaaccccaaaaaactgctaaagagcgagagcctagcacaagcacagctgtggattct
aaaagtttaaaacacaaaaagcataggaagaagaggaggttggatgatggtgatatcttc
agtcattctgattctatggatgaatttaagaaagatgagagaaaaggcgagtctatgatg
aactcgactcgtgacgatgccaccccagtcagggatgagccaatggacagcacttcattg
ccctacaagagctcctcagacaaggagagaaaggagaggaccaaaagcaagattgaaaaa
gtcaagcgcaaggtcgacagtggcactcagaagaaggaaggttcttcaaagaccttcaag
tccgttaaagaaaaggatgtggatgcatccagagacaaaatgacttcctctgaccctcca
attaaaagaatcaaggaagaaccatctcagaagactgatgctagcaaaccacattcctca
gagaaaatcatgcttcctcgcaaactgatgcagtctagaccagtcaaacatcaccaagag
ctaaagcctgtcaaagatgagcttaaaatcaagaaggaggtggtcaaagactctcaggtg
aagactgagaaatcttcaaaagatggaaagcccaagcttgagaagcctgtcaaaactgag
gagaaggtgtccaccaaaacgggtgatgtaaaagtggagaaacgtaaacgaaaggacgac
aagccaggcattaaagaaccagaggtgcctctcactaaatcaccgagggctgaatctgca
gatgtggccagagggtctcccaagcctaagcccaaacccaaggtcgagggtgagaaaccg
gtggagaaagaaaaaacagccatcccttctctgatggacattaagcctgagcctgtgaga
aagatcaagctcaaccgtgagattggaaagagaatcactagcactgaccagcttcctact
gaagactctggggtagctgttgggaagaacaaagtggaccagaagtcaaagaccaggatc
cggcgaagagttcgtgctccagatgggtctggatccttgttggttgattacacaagcacg
agctccacaggcggtagtcccatcaagaggcatccagacgagaagctagacctgaagaag
actgtggtgaagactctagaagagtacactaatgacagctctacacctgctgaggatgag
atcgttatgatccaggttcctcgctctaagtgggagaaagaagattatgaatctgaggat
gatgattccaagactgcggctgcaacaacttctgcaaacactggtccttctgctagtggg
gaaaacgcagcttcaaaatctagtgacaaagaggctgacaaaactgccaatgcctctaaa
gacaccaacactgagaccaagcctgccaaagacctgtcatcaagtgaggtggagactgac
cgagataaggaaagtgagaaggaacgagagagggtcagagaacgagatcgcagtgcctca
gatcacgagtcttcagacaagaggaaggctggcacagtcagtctggatagaggtagcgac
cacagcagtgagagaagctcttcttcccagtcctccagagatcgaccatctgacagatct
gcatcatcttccaggaagccattgagcagagaagtcaacacaagcctgcctgaaagaaag
ccagaccaccgagcaaccacgagagatcattcagagtcttggcagagggaaccaaaacca
agggaaccccttaggaggaaggactcgccacctctttcctcttcaaggggcagtaaagaa
catgatgttctcacagatgtaggtaaaagagctcctgctgtttctcaggactccaaaagg
acagataacagcccttctggagagaaaagggcaacagctcagagtcaaccagctctagag
tctaaaagacctgctccagaagaacacaaaacagacaggcagctgcagagcttgagacat
gctgatggtagatccacaaaggatagggaccatgtggtacacaaaccttcacataggact
gcttctccagattccaagaccgaggcagagcgggctggagctcatccagaacgagatcat
cccaaagtcaagcctccatcgatacgatccatgcgactctcctcagacctgacgcgagaa
acggacgaggctgcctttgtccctgattacagcgagagtgaaagcgaggcctctgaccct
gagaacaaggcagaacacaaggaccgtggcagggacagcagtgcaagccccgcccagagc
cgcagtgccagcccctctgggagccacgcccacagcagctcacctagctcaccaggcagc
caggacagtaagaaaaggaaaaaggacaagaaggacaagaaagacaaaaagaagcacaag
aagcacaaaaaacacaagaaacacaaaaagcacaccagcaatgagttggaatccgaggcc
aaaggacagaaacacaagcataaaaagaagaaatccaaaaagagcaaagacaaggaggag
aaggacgagcgagtgaaagaagagccaacggataaagctcctgtttaa
DBGET
integrated database retrieval system
