KEGG   Astyanax mexicanus (Mexican tetra): 111188241
Entry
111188241         CDS       T05042                                 
Symbol
xrcc1
Name
(RefSeq) DNA repair protein XRCC1 isoform X1
  KO
K10803  DNA-repair protein XRCC1
Organism
amex  Astyanax mexicanus (Mexican tetra)
Pathway
amex03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:amex00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    111188241 (xrcc1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:amex03400]
    111188241 (xrcc1)
DNA repair and recombination proteins [BR:amex03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Short Patch-BER factors
     111188241 (xrcc1)
SSDB
Motif
Pfam: XRCC1_N BRCT BRCT_2 PTCB-BRCT LIG3_BRCT
Other DBs
NCBI-GeneID: 111188241
NCBI-ProteinID: XP_049321033
LinkDB
Position
1:133568575..133600845
AA seq 622 aa
MPEIKLKHVVSCSTEDSTHKADNLLSSDTYRKWKSARPGEKQTSVILQFEKEEQVHSIDV
GNEGSAFIEVLVGHSTSVRDQDFQVLLVTSSFMSPTESRSGTNLNRVRFFGPQQLVKATA
QEKWDRVKIVCSQPYSKNIAYGVSFIKFHSPPDGSEPPAATPPKLTKLGQFRVKDESPAS
GSNLQPGSLFFNRDAPAKPSPALKVSPQSTKLSYAAAALQSEPSTQNPPTTSSPQAPVKR
KFEFSKERQEAPPPPAKKPSPSVSPQTGSATPRTKPSSAHTTSPNPAKSRTEKKPEIKPK
PKPRSVEAVPLNRIMEGVVFVLSGFQNPFRGELRDKALAMGGRYRPDWTPDSTHLICAFA
NTPKYGQVKAAGGLIVRKEWVLDCHKRKQKISYKRYLMDGAESSSEESGPEEEDGSDEEV
EKKSPEKRPVTPRKSPVKSAVKEEEEYGGSTDGPDEEDEEEDGSGMDTEDELRRVEMKRK
KKKGGEGGGVDGGEGERGAGRVERESDPYGGSTDENTDAEEEEDKPIPPLPDFLSGKRFY
LYGTFPDNQRRLLQRYIIAFDGAMEEYMSEKVQFVITSQGWDDSFEDALMENGNLSFVKP
TWIFAINDRQKLLPYQPYTVVP
NT seq 1869 nt   +upstreamnt  +downstreamnt
atgccggagattaaactgaagcacgtggtttcctgcagcactgaggactcaactcacaag
gcggataacctgctgagctccgacacgtacaggaagtggaaatctgcccgacccggggag
aagcagacgtccgttatcttacagttcgagaaggaggagcaggtgcacagtatcgatgtg
gggaacgagggctccgccttcatcgaggttctggtgggtcactccacctccgtcagggat
caggactttcaggttctgctggtgacgtcatcgttcatgtccccgaccgagagccgcagc
ggaaccaacctgaaccgggttcggttcttcgggcctcagcagctggtgaaggccacggcc
caggagaagtgggaccgggtcaaaatcgtctgcagtcagccctacagcaagaacatcgcg
tacggagtgtcgtttataaagttccactctccacccgacggctctgaacctcccgctgct
actccacctaagttgactaaactgggacagttccgggtgaaggacgagtctccggcgtcc
ggatcgaacctgcagcccggcagcctgttcttcaaccgggacgccccggctaaacccagc
ccggcactgaaggtttctcctcagagcactaaactgagttatgctgcagctgctctccaa
tcagaaccttccacccagaacccgcccaccaccagctcaccacaggctccagttaagagg
aagttcgagttcagtaaggaacgacaggaagctccgccccctccggctaaaaagcccagc
ccctccgtctctcctcagacaggatcggccacgcccagaaccaaacctagctccgcccac
acaaccagcccgaacccggctaagagcagaaccgagaaaaagccggagatcaaacccaaa
cccaaacccagatcggtggaggcggttccgttaaaccggatcatggagggcgtggtgttc
gtcctgagcggcttccagaacccgttccgcggagaactgagagacaaagccctcgccatg
ggggggcggtaccgacccgactggacccccgactccacccacctcatctgtgcgttcgcc
aacaccccgaagtacgggcaggtgaaggcggcgggggggctgatcgtccggaaggagtgg
gtgctggactgccataagaggaagcagaagatctcctacaaacggtatctgatggacggg
gcggagtccagctcggaggagagcggtcctgaggaagaggatggaagtgatgaagaggtg
gagaagaagagtccggagaagaggccggtcaccccgaggaagagtccggttaaatccgcg
gtgaaggaggaggaagagtatggcggctctactgatggtccagatgaagaagatgaagag
gaggatgggtctgggatggacactgaagatgagctgaggagggtggagatgaagaggaag
aagaagaagggaggagaaggtggaggagtggatggaggagagggggagcgaggagcagga
cgagtggagagagagagcgacccgtacggaggatctacagacgagaacaccgacgccgag
gaggaggaggacaaacccatccctcctttaccagacttcctgtcggggaagaggttttat
ctgtacgggacgtttcctgataatcagcgccgactccttcagcgctacatcatcgccttc
gacggggcgatggaggagtacatgagtgagaaggttcagtttgtgatcaccagtcaggga
tgggacgactcttttgaagatgctctgatggagaacggtaatctgagttttgtaaaacca
acatggatttttgcaattaatgatcgacagaagctgttaccctaccagccctacactgta
gtaccctga

DBGET integrated database retrieval system